RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ZNF571Q7Z3V5 609 aaPredicted RBP2.82□□□□□ -1.96
HMGB1P28-201ENST00000507778 TRIM69Q86WT6 500 aa2.82□□□□□ -1.96
HMGB1P28-201ENST00000507778 RDH10Q8IZV5 341 aa2.82□□□□□ -1.96
HMGB1P28-201ENST00000507778 NKAPP1Q8N9T2 125 aa2.82□□□□□ -1.96
HMGB1P28-201ENST00000507778 OR51S1Q8NGJ8 323 aa2.82□□□□□ -1.96
HMGB1P28-201ENST00000507778 DCUN1D4Q92564 292 aa2.82□□□□□ -1.96
HMGB1P28-201ENST00000507778 UFD1Q92890 307 aa2.82□□□□□ -1.96
HMGB1P28-201ENST00000507778 TMEM101Q96IK0 257 aa2.82□□□□□ -1.96
HMGB1P28-201ENST00000507778 MTMR9Q96QG7 549 aa2.82□□□□□ -1.96
HMGB1P28-201ENST00000507778 GON7Q9BXV9 100 aa2.82□□□□□ -1.96
HMGB1P28-201ENST00000507778 PLGRKTQ9HBL7 147 aa2.82□□□□□ -1.96
HMGB1P28-201ENST00000507778 HOXC10Q9NYD6 342 aa2.82□□□□□ -1.96
HMGB1P28-201ENST00000507778 CDH10Q9Y6N8 788 aa2.82□□□□□ -1.96
HMGB1P28-201ENST00000507778 PLEKHG1Q9ULL1 1385 aa2.82□□□□□ -1.96
HMGB1P28-201ENST00000507778 A0A1B0GVL5 298 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 SNTNA6NMZ2 147 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 USP27XA6NNY8 438 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 A8MUA0 341 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 LOC110117498-PIK3R3F6TDL0 507 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 GOLGA8SH3BPF8 625 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 FCMRO60667 390 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 TSPAN12O95859 305 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 P04436 131 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 ELK1P19419 428 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 CXCR2P25025 360 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 CAV2P51636 162 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 KPNA2P52292 529 aaKnown RBP2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 WNT4P56705 351 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 CDK16Q00536 496 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 OGDHQ02218 1023 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 NSDHLQ15738 373 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 IMMTQ16891 758 aaKnown RBP2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 BCL7AQ4VC05 210 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 MARCH8Q5T0T0 291 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 Q6ZN92 141 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 DHDDSQ86SQ9 333 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 C6orf223Q8N319 242 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 FAM83FQ8NEG4 500 aaPredicted RBP2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 OR10G3Q8NGC4 313 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 OR8J1Q8NGP2 316 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 UCN3Q969E3 161 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 CMTM7Q96FZ5 175 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 NPY6RQ99463 290 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 TSG101Q99816 390 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 P2RY13Q9BPV8 354 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 MRPL45Q9BRJ2 306 aaKnown RBP2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 GCOM2Q9BZD3 368 aaPredicted RBP2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 ASB8Q9H765 288 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 SLC25A22Q9H936 323 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 SGK2Q9HBY8 427 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 HYPKQ9NX55 129 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 KANK1Q14678 1352 aa2.81□□□□□ -1.96
HMGB1P28-201ENST00000507778 FAM240BA0A1B0GVZ2 78 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 PSMB11A5LHX3 300 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 GFYI3L273 518 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 HSD17B6O14756 317 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 IGHDP01880 384 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 ZNF853P0CG23 659 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 DUX4L4P0CJ87 422 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 EPS15P42566 896 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 GLP1RP43220 463 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 TAS2R19P59542 299 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 SEC61GP60059 68 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 HMGN5P82970 282 aaKnown RBP2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 PLD1Q13393 1074 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 C1orf100Q5SVJ3 147 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 OR2A2Q6IF42 318 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 IL34Q6ZMJ4 242 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 SLC26A11Q86WA9 606 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 ECHDC2Q86YB7 292 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 DCAF4L2Q8NA75 395 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 OR13C2Q8NGS9 318 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 NEIL3Q8TAT5 605 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 SHC3Q92529 594 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 TCEANC2Q96MN5 208 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 OXGR1Q96P68 337 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 NAT9Q9BTE0 207 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 ACTR6Q9GZN1 396 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 C20orf85Q9H1P6 137 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 NANOGQ9H9S0 305 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 SEC14L3Q9UDX4 400 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 NPTNQ9Y639 398 aa2.8□□□□□ -1.96
HMGB1P28-201ENST00000507778 THSD7BQ9C0I4 1608 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 NSG1A0A0A6YYJ2 146 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 H0Y9J4 135 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 HTR1EP28566 365 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 PRDX3P30048 256 aaKnown RBP2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 OPRD1P41143 372 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 GSSP48637 474 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 ARRB1P49407 418 aaPredicted RBP2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 CDH4P55283 916 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 NUP107P57740 925 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 PRPS1P60891 318 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 RPL23AP62750 156 aaKnown RBP2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 ZNF763Q0D2J5 394 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 PSG7Q13046 419 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 OR5I1Q13606 314 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 PAGE3Q5JUK9 113 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 CASC10Q5T4H9 136 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 ENPP6Q6UWR7 440 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms