RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 TAS2R43P59537 309 aa19.24■□□□□ 0.67
CCDC88B-208ENST00000492980 LTBQ06643 244 aa19.24■□□□□ 0.67
CCDC88B-208ENST00000492980 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.24■□□□□ 0.67
CCDC88B-208ENST00000492980 NLGN4YQ8NFZ3 816 aaPredicted RBP19.24■□□□□ 0.67
CCDC88B-208ENST00000492980 STT3BQ8TCJ2 826 aa19.24■□□□□ 0.67
CCDC88B-208ENST00000492980 SLC7A5P2Q9GIP4 190 aa19.24■□□□□ 0.67
CCDC88B-208ENST00000492980 KCNN2Q9H2S1 579 aa19.24■□□□□ 0.67
CCDC88B-208ENST00000492980 NANSQ9NR45 359 aa19.24■□□□□ 0.67
CCDC88B-208ENST00000492980 PILRBQ9UKJ0 227 aa19.24■□□□□ 0.67
CCDC88B-208ENST00000492980 MYO15AQ9UKN7 3530 aa19.23■□□□□ 0.67
CCDC88B-208ENST00000492980 BLOC1S5-TXNDC5H3BN57 136 aa19.23■□□□□ 0.67
CCDC88B-208ENST00000492980 SIGLEC6O43699 453 aa19.23■□□□□ 0.67
CCDC88B-208ENST00000492980 ASAH2BP0C7U1 165 aa19.23■□□□□ 0.67
CCDC88B-208ENST00000492980 DIO1P49895 249 aa19.23■□□□□ 0.67
CCDC88B-208ENST00000492980 CCL7P80098 99 aa19.23■□□□□ 0.67
CCDC88B-208ENST00000492980 ACY1Q03154 408 aa19.23■□□□□ 0.67
CCDC88B-208ENST00000492980 LGALS3BPQ08380 585 aa19.23■□□□□ 0.67
CCDC88B-208ENST00000492980 KRR1Q13601 381 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-208ENST00000492980 GHDCQ8N2G8 530 aa19.23■□□□□ 0.67
CCDC88B-208ENST00000492980 SLC38A9Q8NBW4 561 aa19.23■□□□□ 0.67
CCDC88B-208ENST00000492980 ATF6BQ99941 703 aa19.23■□□□□ 0.67
CCDC88B-208ENST00000492980 RNF32Q9H0A6 362 aa19.23■□□□□ 0.67
CCDC88B-208ENST00000492980 IGLV3-12A0A075B6K2 115 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 NDUFB5O43674 189 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 GMFGO60234 142 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 OR2T7P0C7T2 308 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 SPI1P17947 270 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 AZGP1P25311 298 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 CAPZA2P47755 286 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 PNLIPRP2P54317 469 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 PON3Q15166 354 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 FAM131AQ6UXB0 335 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 GDPD3Q7L5L3 318 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 C17orf47Q8NEP4 570 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 OR2T27Q8NH04 317 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 OR5J2Q8NH18 312 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 KTI12Q96EK9 354 aaPredicted RBP19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 DIRAS2Q96HU8 199 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 TBC1D24Q9ULP9 559 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 IGHV3-20A0A0C4DH32 117 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 TEX13CA0A0J9YWL9 993 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 AGRPO00253 132 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 TIAF1O95411 115 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 UQCRC1P31930 480 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 NAA10P41227 235 aaPredicted RBP19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 MTNR1BP49286 362 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 BAK1Q16611 211 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 HLA-BQ31612 363 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 SLC35D3Q5M8T2 416 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 RPTNQ6XPR3 784 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 FAM122BQ7Z309 247 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 WDR5BQ86VZ2 330 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 SLC35F2Q8IXU6 374 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 Q96M85 177 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 OR6C1Q96RD1 312 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 TTTY10Q9BZA0 68 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 TBL1XR1Q9BZK7 514 aa19.22■□□□□ 0.67
CCDC88B-208ENST00000492980 PI4KAP42356 2102 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 EIF4E2O60573 245 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 TDGF1P13385 188 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 F8A1P23610 371 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 CD97P48960 835 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 PPP3R1P63098 170 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 SLC3A1Q07837 685 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 TRAM1Q15629 374 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 TOMM34Q15785 309 aaPredicted RBP19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 ALG10Q5BKT4 473 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 PGLYRP3Q96LB9 341 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 COMMD3Q9UBI1 195 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 SUSD2Q9UGT4 822 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 SLC6A5Q9Y345 797 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 FABP12A6NFH5 140 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 C4orf47A7E2U8 309 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 PDGFBP01127 241 aaPredicted RBP19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 CD14P08571 375 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 APEHP13798 732 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 PYCR1P32322 319 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 TP53I3Q53FA7 332 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 DMKNQ6E0U4 476 aaPredicted RBP19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 LEG1Q6P5S2 330 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 XKRXQ6PP77 449 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 NUP54Q7Z3B4 507 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 OR4D9Q8NGE8 314 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 DEPDC7Q96QD5 511 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 LPAR4Q99677 370 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 PPIL3Q9H2H8 161 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 ST6GALNAC2Q9UJ37 374 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 GRIP1Q9Y3R0 1128 aa19.21■□□□□ 0.67
CCDC88B-208ENST00000492980 IGHV5-10-1A0A0J9YXX1 117 aa19.2■□□□□ 0.66
CCDC88B-208ENST00000492980 IL7P13232 177 aa19.2■□□□□ 0.66
CCDC88B-208ENST00000492980 ITPKBP27987 946 aa19.2■□□□□ 0.66
CCDC88B-208ENST00000492980 CDKN2AP42771 156 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-208ENST00000492980 IL10RAQ13651 578 aa19.2■□□□□ 0.66
CCDC88B-208ENST00000492980 NKAIN1Q4KMZ8 207 aa19.2■□□□□ 0.66
CCDC88B-208ENST00000492980 TAAR8Q969N4 342 aa19.2■□□□□ 0.66
CCDC88B-208ENST00000492980 TMCO6Q96DC7 493 aa19.2■□□□□ 0.66
CCDC88B-208ENST00000492980 MESP1Q9BRJ9 268 aa19.2■□□□□ 0.66
CCDC88B-208ENST00000492980 MARCH7Q9H992 704 aa19.2■□□□□ 0.66
CCDC88B-208ENST00000492980 TIGARQ9NQ88 270 aa19.2■□□□□ 0.66
CCDC88B-208ENST00000492980 KHNYNO15037 678 aaKnown RBP19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms