RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 MAPRE2Q15555 327 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 ADRM1Q16186 407 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 TRMT5Q32P41 509 aaKnown RBP13.32□□□□□ -0.28
USP39-217ENST00000491659 TIMM23BQ5SRD1 257 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 NCMAPQ5T1S8 102 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 TMEM225Q6GV28 225 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 C5orf46Q6UWT4 87 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 C6orf89Q6UWU4 347 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 P2RY8Q86VZ1 359 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 SLC30A8Q8IWU4 369 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 ZNF433Q8N7K0 673 aaPredicted RBP13.32□□□□□ -0.28
USP39-217ENST00000491659 OR9K2Q8NGE7 335 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 OR52E4Q8NGH9 312 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 DNAJA4Q8WW22 397 aaPredicted RBP13.32□□□□□ -0.28
USP39-217ENST00000491659 TMEM45BQ96B21 275 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 TMEM204Q9BSN7 226 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 PIF1Q9H611 641 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 MED4Q9NPJ6 270 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 SELENONQ9NZV5 590 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 A0A1B0GWA3 101 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 OR5H1A6NKK0 313 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 HS3ST1O14792 307 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 CLOCKO15516 846 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 ARHGEF9O43307 516 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 TPST1O60507 370 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 NPIPB7O75200 414 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 VAMP5O95183 116 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 PLAUP00749 431 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 PNMTP11086 282 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 HTR2AP28223 471 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 RPS5P46782 204 aaKnown RBP13.31□□□□□ -0.28
USP39-217ENST00000491659 ADAM8P78325 824 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 NKX6-1P78426 367 aaPredicted RBP13.31□□□□□ -0.28
USP39-217ENST00000491659 GUCY1A3Q02108 690 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 FOXD4Q12950 439 aaPredicted RBP13.31□□□□□ -0.28
USP39-217ENST00000491659 CYLC2Q14093 348 aaPredicted RBP13.31□□□□□ -0.28
USP39-217ENST00000491659 MMEL1Q495T6 779 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 GLIPR1L2Q4G1C9 344 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 ALG10BQ5I7T1 473 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 AAED1Q7RTV5 226 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 COMTD1Q86VU5 262 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 RANBP3LQ86VV4 465 aaPredicted RBP13.31□□□□□ -0.28
USP39-217ENST00000491659 PTOV1Q86YD1 416 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 P3H2Q8IVL5 708 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 LRRC75A-AS1Q8N1F1 130 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 LSMEM1Q8N8F7 131 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 MFSD8Q8NHS3 518 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 RNF217Q8TC41 542 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 SLC38A4Q969I6 547 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 TMUB1Q9BVT8 246 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 TMEM27Q9HBJ8 222 aa13.31□□□□□ -0.28
USP39-217ENST00000491659 BBIP1A8MTZ0 92 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 NTF4P34130 210 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 PCGF2P35227 344 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 PCBP3P57721 371 aaKnown RBP13.3□□□□□ -0.28
USP39-217ENST00000491659 BSPH1Q075Z2 132 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 DMTNQ08495 405 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 SF3A3Q12874 501 aaKnown RBP eCLIP13.3□□□□□ -0.28
USP39-217ENST00000491659 COQ5Q5HYK3 327 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 INTS11Q5TA45 600 aaKnown RBP13.3□□□□□ -0.28
USP39-217ENST00000491659 SHEQ5VZ18 495 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 FAM91A1Q658Y4 838 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 OR7E24Q6IFN5 339 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 CGB2Q6NT52 195 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 ULK3Q6PHR2 472 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 SEZ6L2Q6UXD5 910 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 NET1Q7Z628 596 aaPredicted RBP13.3□□□□□ -0.28
USP39-217ENST00000491659 ZNF611Q8N823 705 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 TMEM171Q8WVE6 324 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 AKAP1Q92667 903 aaKnown RBP eCLIP13.3□□□□□ -0.28
USP39-217ENST00000491659 SLC25A36Q96CQ1 311 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 SLC47A1Q96FL8 570 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 ZNF385AQ96PM9 386 aaKnown RBP13.3□□□□□ -0.28
USP39-217ENST00000491659 SLCO5A1Q9H2Y9 848 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 CCDC134Q9H6E4 229 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 KAT8Q9H7Z6 458 aaKnown RBP13.3□□□□□ -0.28
USP39-217ENST00000491659 RASD1Q9Y272 281 aa13.3□□□□□ -0.28
USP39-217ENST00000491659 FTCDNL1E5RQL4 147 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 FBP2O00757 339 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 MRASO14807 208 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 OR2T1O43869 369 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 MFN2O95140 757 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 OPN1SWP03999 348 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 ITGA5P08648 1049 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 HOXC12P31275 282 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 P2RY4P51582 365 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 TGFBR3Q03167 851 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 EGR4Q05215 589 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 KLF10Q13118 480 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 Q5PR19 223 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 FAM69AQ5T7M9 428 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 TSPO2Q5TGU0 170 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 ADAM5Q6NVV9 412 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 ABHD12BQ7Z5M8 362 aaPredicted RBP13.29□□□□□ -0.28
USP39-217ENST00000491659 PATL1Q86TB9 770 aaKnown RBP13.29□□□□□ -0.28
USP39-217ENST00000491659 POMGNT2Q8NAT1 580 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 SMYD1Q8NB12 490 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 C1orf162Q8NEQ5 155 aaPredicted RBP13.29□□□□□ -0.28
USP39-217ENST00000491659 WFDC11Q8NEX6 87 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 OR52N5Q8NH56 324 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms