RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 MRPL48Q96GC5 212 aaKnown RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 ZNF558Q96NG5 402 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 NPAS1Q99742 590 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 NOX4Q9NPH5 578 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 PRDM7Q9NQW5 492 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 HPF1Q9NWY4 346 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 LRRK1Q38SD2 2015 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 TEX46H3BTG2 121 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 DNASE2O00115 360 aaPredicted RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 PPP1R3DO95685 299 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 HPP00738 406 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 PLATP00750 562 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 NDUFS1P28331 727 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 DCTDP32321 178 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 BCL6P41182 706 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 ZNF660Q6AZW8 331 aaPredicted RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 FAM109BQ6ICB4 259 aaPredicted RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 FAAP20Q6NZ36 180 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 UNQ9370/PRO34162Q6UXP9 181 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 MCATQ8IVS2 390 aaKnown RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 SERPINA12Q8IW75 414 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 RFLNBQ8N5W9 214 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 LINC01555Q8NAE3 123 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 OR2L5Q8NG80 312 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 SYNPRQ8TBG9 265 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 CNN2Q99439 309 aaKnown RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 PBX4Q9BYU1 374 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 SLC25A32Q9H2D1 315 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 EVA1AQ9H8M9 152 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 FBXL4Q9UKA2 621 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 FOXJ3Q9UPW0 622 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 PCYT1BQ9Y5K3 369 aaPredicted RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 TCF20Q9UGU0 1960 aaKnown RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 HEATR5BQ9P2D3 2071 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 MPTX1A8MV57 137 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 C4orf51C9J302 202 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 PRAMEF2O60811 474 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 PRNPP04156 253 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 SLC35G4P0C7Q5 338 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 CERS1P27544 350 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 HTR2AP28223 471 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 CLDN2P57739 230 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 PPP2CBP62714 309 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 PPP2CAP67775 309 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 MAT1AQ00266 395 aaKnown RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 RBMS2Q15434 407 aaKnown RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 LTB4RQ15722 352 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 STK11Q15831 433 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 NDUFAF6Q330K2 333 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 ARHGAP11BQ3KRB8 267 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 LY6G5CQ5SRR4 150 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 ZNF433Q8N7K0 673 aaPredicted RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 OR5M1Q8NGP8 315 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 OR6K3Q8NGY3 331 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 LILRB1Q8NHL6 650 aaPredicted RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 NSMAFQ92636 917 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 WDR89Q96FK6 387 aaPredicted RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 ZNF681Q96N22 645 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 SLC23A2Q9UGH3 650 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 GNG8Q9UK08 70 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 KLF2Q9Y5W3 355 aaPredicted RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 MDC1Q14676 2089 aaKnown RBP12.23□□□□□ -0.45
USP40-214ENST00000483519 MYO10Q9HD67 2058 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 TRAV27A0A087WT01 109 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 IGKV1-8A0A0C4DH67 115 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 FAM25EA8MYX2 175 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 PCDH8O95206 1070 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 LAMP2P13473 410 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 ZNF35P13682 527 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 MNDAP41218 407 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 ERVFC1P60507 584 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 B2MP61769 119 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 AMZ1Q400G9 498 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 ATRAIDQ6UW56 229 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 PXT1Q8NFP0 134 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 OR52B4Q8NGK2 314 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 ASB13Q8WXK3 278 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 OR1F2PQ96R84 312 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 PDCD1LG2Q9BQ51 273 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 MACROD1Q9BQ69 325 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 EXOSC3Q9NQT5 275 aaKnown RBP12.23□□□□□ -0.45
USP40-214ENST00000483519 V9GY05 133 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 LINC01553A4QN01 128 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 PYCARD-AS1I3L0S3 204 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 CA3P07451 260 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 CALCBP10092 127 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 HOXB3P14651 431 aaPredicted RBP12.23□□□□□ -0.45
USP40-214ENST00000483519 RPA2P15927 270 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 SLC6A6P31641 620 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 TSFMP43897 325 aaKnown RBP12.23□□□□□ -0.45
USP40-214ENST00000483519 H2BFSP57053 126 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 ST8SIA6P61647 398 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 METRNLQ641Q3 311 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 FAM111BQ6SJ93 734 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 NRROSQ86YC3 692 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 TMEM151BQ8IW70 566 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 OR51A7Q8NH64 312 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 HAVCR1Q96D42 359 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 LRRC46Q96FV0 321 aa12.23□□□□□ -0.45
USP40-214ENST00000483519 DNTTIP1Q9H147 329 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms