RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 PLEKHM3Q6ZWE6 761 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 OLIG3Q7RTU3 272 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 RNF130Q86XS8 419 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 TUSC5Q8IXB3 177 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 CMIPQ8IY22 773 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 ARFGAP2Q8N6H7 521 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 FAM71CQ8NEG0 241 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 ZNF563Q8TA94 476 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 SLC25A43Q8WUT9 341 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 ZNF524Q96C55 264 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 MAELQ96JY0 434 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 TRNT1Q96Q11 434 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 OR5B2Q96R09 309 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 HDHD5Q9BXW7 423 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 ACTR6Q9GZN1 396 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 COQ10BQ9H8M1 238 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 EXOSC3Q9NQT5 275 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 ACER3Q9NUN7 267 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 KLHL9Q9P2J3 617 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 PCDHB10Q9UN67 800 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 LIPT1Q9Y234 373 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 GPR52Q9Y2T5 361 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 SPIN1Q9Y657 262 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 X6R8D5 127 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 MAP1AP78559 2803 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 AGAP5A6NIR3 686 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 SULT2B1O00204 365 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 UBDO15205 165 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 CYTIPO60759 359 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 BCAS1O75363 584 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 ANP32DO95626 131 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 KRT75O95678 551 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 YES1P07947 543 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 NR2F1P10589 423 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 TFPIP10646 304 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 FPR1P21462 350 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 ENPP1P22413 925 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 FKBP2P26885 142 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 APOBEC1P41238 236 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 CDKN2CP42773 168 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 MAGEA8P43361 318 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 GIPRP48546 466 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 GYS2P54840 703 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 NR1H2P55055 460 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 CSNK2A1P68400 391 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 ADAM8P78325 824 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 GNA13Q14344 377 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 SYPL1Q16563 259 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 ACKR1Q16570 336 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 KRTAP15-1Q3LI76 137 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 SLC9B1Q4ZJI4 515 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 SYT14P1Q58G82 188 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 BEX5Q5H9J7 111 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 TEPPQ6URK8 271 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 TFAP2EQ6VUC0 442 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 MSANTD1Q6ZTZ1 278 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 NUFIP2Q7Z417 695 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 GRINAQ7Z429 371 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 CXorf67Q86X51 503 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 ANKFN1Q8N957 763 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 STEAP2Q8NFT2 490 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 PIGTQ969N2 578 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 ZHX1-C8orf76Q96EF9 292 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 MARK4Q96L34 752 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 CCL19Q99731 98 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 PIP5K1AQ99755 562 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 PSD2Q9BQI7 771 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 INPP5KQ9BT40 448 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 CCDC106Q9BWC9 280 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 QRSL1Q9H0R6 528 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 RMND5AQ9H871 391 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 SEC61A2Q9H9S3 476 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 UBTD1Q9HAC8 227 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 BCO1Q9HAY6 547 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 SDR39U1Q9NRG7 319 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 ZIM2Q9NZV7 527 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 P2RX2Q9UBL9 471 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 CHRNA9Q9UGM1 479 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 ROS1P08922 2347 aa6.03□□□□□ -1.44
CCDC88A-213ENST00000476903 IGHV3-15A0A0B4J1V0 119 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 CLDN24A6NM45 220 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF724A8MTY0 619 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 SMAD9O15198 467 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 KLF4O43474 513 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 DIAPH2O60879 1101 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 SMPD2O60906 423 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 GCM2O75603 506 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 PMS2P2O95744 297 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 ADAP00813 363 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 C1QCP02747 245 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 DBIP07108 87 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 FESP07332 822 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 CHRM4P08173 479 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 ZCCHC18P0CG32 403 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 UQCRBP14927 111 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 IL7RP16871 459 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 RPS4Y1P22090 263 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 IL32P24001 234 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms