RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 WI2-2373I1.2A0A1W2PRP0 233 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 RS1O15537 224 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 TBX19O60806 448 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 SUPT7LO94864 414 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 RPA2P15927 270 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 MGMTP16455 207 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 FGF9P31371 208 aaPredicted RBP3.35□□□□□ -1.87
PTCD3-211ENST00000476215 RGS4P49798 205 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 CKAP4Q07065 602 aaKnown RBP3.35□□□□□ -1.87
PTCD3-211ENST00000476215 TP53I3Q53FA7 332 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 IL34Q6ZMJ4 242 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 SVOPLQ8N434 492 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 OR56B4Q8NH76 319 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 ELSPBP1Q96BH3 223 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 SH3YL1Q96HL8 342 aaPredicted RBP3.35□□□□□ -1.87
PTCD3-211ENST00000476215 ARHGDIGQ99819 225 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 KLHDC3Q9BQ90 382 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 SLC35A5Q9BS91 424 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 KRTAP4-3Q9BYR4 195 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 RAB33BQ9H082 229 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 SMYD3Q9H7B4 428 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 SH2D2AQ9NP31 389 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 SLC17A5Q9NRA2 495 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 SIGLEC8Q9NYZ4 499 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 CGNQ9P2M7 1197 aaKnown RBP3.35□□□□□ -1.87
PTCD3-211ENST00000476215 TBK1Q9UHD2 729 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 BTNL2Q9UIR0 455 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 UGT2A1Q9Y4X1 527 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 PLCH1Q4KWH8 1693 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 CLSPNQ9HAW4 1339 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 TONSLQ96HA7 1378 aa3.35□□□□□ -1.87
PTCD3-211ENST00000476215 NRAPQ86VF7 1730 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 ABCA3Q99758 1704 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 HELTA6NFD8 242 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 ANGPT2O15123 496 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 ZNF861PO60384 105 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 N4BP1O75113 896 aaKnown RBP3.34□□□□□ -1.87
PTCD3-211ENST00000476215 UGT2B4P06133 528 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 POLR2EP19388 210 aaKnown RBP3.34□□□□□ -1.87
PTCD3-211ENST00000476215 HNRNPA2B1P22626 353 aaKnown RBP3.34□□□□□ -1.87
PTCD3-211ENST00000476215 ANXA13P27216 316 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 PSMA5P28066 241 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 CD1BP29016 333 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 YWHABP31946 246 aaKnown RBP3.34□□□□□ -1.87
PTCD3-211ENST00000476215 APOC4P55056 127 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 BIDP55957 195 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 CSNK1G2P78368 415 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 ARL6IP1Q15041 203 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 CES3Q6UWW8 571 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 ACOT7LQ6ZUV0 252 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 CCDC71LQ8N9Z2 235 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 SYT14Q8NB59 555 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 ZNF740Q8NDX6 193 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 OR2T34Q8NGX1 318 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 MRPS31Q92665 395 aaKnown RBP3.34□□□□□ -1.87
PTCD3-211ENST00000476215 RAB7BQ96AH8 199 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 TMEM101Q96IK0 257 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 C7orf34Q96L11 122 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 AMDHD1Q96NU7 426 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 POLR2J2Q9GZM3 115 aaKnown RBP3.34□□□□□ -1.87
PTCD3-211ENST00000476215 POLR2J3Q9H1A7 115 aaKnown RBP3.34□□□□□ -1.87
PTCD3-211ENST00000476215 NANOGQ9H9S0 305 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 NUDT15Q9NV35 164 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 AATFQ9NY61 560 aaKnown RBP eCLIP3.34□□□□□ -1.87
PTCD3-211ENST00000476215 RNF14Q9UBS8 474 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 PHF11Q9UIL8 331 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 ERVW-1Q9UQF0 538 aa3.34□□□□□ -1.87
PTCD3-211ENST00000476215 AK6Q9Y3D8 172 aaKnown RBP3.34□□□□□ -1.87
PTCD3-211ENST00000476215 BCL9O00512 1426 aa3.34□□□□□ -1.88
PTCD3-211ENST00000476215 SLIT3O75094 1523 aa3.34□□□□□ -1.88
PTCD3-211ENST00000476215 THSD7BQ9C0I4 1608 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 THSD7AQ9UPZ6 1657 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 ITSN1Q15811 1721 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 CRYBG1Q9Y4K1 1723 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 GOLGB1Q14789 3259 aaKnown RBP3.33□□□□□ -1.88
PTCD3-211ENST00000476215 A0A0G2JRQ6 117 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 USP27XA6NNY8 438 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 TRIM49D1C9J1S8 452 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 BTN3A3O00478 584 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 OR10H3O60404 316 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 KIAA0754O94854 1291 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 SNAPINO95295 136 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 KRT6AP02538 564 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 RBMY1CP0DJD4 496 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 DAP3P51398 398 aaKnown RBP3.33□□□□□ -1.88
PTCD3-211ENST00000476215 HNRNPA3P51991 378 aaKnown RBP3.33□□□□□ -1.88
PTCD3-211ENST00000476215 HSD17B7P56937 341 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 CBX1P83916 185 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 SLC15A2Q16348 729 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 ZNF630Q2M218 657 aaPredicted RBP3.33□□□□□ -1.88
PTCD3-211ENST00000476215 DNAJC21Q5F1R6 531 aaKnown RBP3.33□□□□□ -1.88
PTCD3-211ENST00000476215 C10orf120Q5SQS8 335 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 SLC25A24Q6NUK1 477 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 CLEC4FQ8N1N0 589 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 RNF175Q8N4F7 328 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 DCAF4L2Q8NA75 395 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 OR4D9Q8NGE8 314 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 UBE2Q2Q8WVN8 375 aa3.33□□□□□ -1.88
PTCD3-211ENST00000476215 DNAJA4Q8WW22 397 aaPredicted RBP3.33□□□□□ -1.88
PTCD3-211ENST00000476215 PELI1Q96FA3 418 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms