RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 WBP2NLQ6ICG8 309 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CASP12Q6UXS9 341 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ZNF836Q6ZNA1 936 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 MAVSQ7Z434 540 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 PEX5LQ8IYB4 626 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 FBXL14Q8N1E6 418 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CLIP4Q8N3C7 705 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 POMGNT2Q8NAT1 580 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 OR52P1PQ8NH57 321 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 PNPT1Q8TCS8 783 aaKnown RBP10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ADAD1Q96M93 576 aaKnown RBP10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TNFRSF13CQ96RJ3 184 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 C1QTNF6Q9BXI9 259 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 KCNK9Q9NPC2 374 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SDR39U1Q9NRG7 319 aaPredicted RBP10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ARGLU1Q9NWB6 273 aaPredicted RBP10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 AMDHD2Q9Y303 409 aa10.71□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 FAM234BA2RU67 622 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 TRPC5OSA6NMA1 111 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 A8MVM7 634 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 TMEM229AB2RXF0 380 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 FTCDNL1E5RQL4 147 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 RFXANKO14593 260 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 SLC22A3O75751 556 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 AKR7A3O95154 331 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 VAMP5O95183 116 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 TP53P04637 393 aaPredicted RBP10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 GPIP06744 558 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 BMP2P12643 396 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 PRG2P13727 222 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ETFAP13804 333 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 IDO1P14902 403 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 HOXB9P17482 250 aaPredicted RBP10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 TGFBR3Q03167 851 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 EGR4Q05215 589 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 RAB35Q15286 201 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ZSWIM7Q19AV6 140 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 TMEM249Q2WGJ8 235 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 BEND6Q5SZJ8 279 aaPredicted RBP10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 MSANTD1Q6ZTZ1 278 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 C10orf105Q8TEF2 133 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 NANOS1Q8WY41 292 aaKnown RBP10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 SLC35B4Q969S0 331 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 TPT1P8Q9HAU6 139 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 OBP2BQ9NPH6 170 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 YAE1D1Q9NRH1 226 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 TMEM160Q9NX00 188 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 CALML5Q9NZT1 146 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ZIM2Q9NZV7 527 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 CRNNQ9UBG3 495 aaPredicted RBP10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 UPB1Q9UBR1 384 aa10.7□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 TMEM120BA0PK00 339 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 A8MV72 311 aaPredicted RBP10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 VWC2LB2RUY7 222 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 SLCO1B7G3V0H7 640 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ZNF432O94892 652 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 UQCRBP14927 111 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 SLC25A16P16260 332 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 CXCR1P25024 350 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 MRPL19P49406 292 aaKnown RBP10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 EFNA4P52798 201 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 NUDT6P53370 316 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 PRPS1P60891 318 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 BNIP2Q12982 314 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 OR7A5Q15622 319 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 C3orf36Q3SXR2 165 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 GTDC1Q4AE62 458 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 SLC9B1Q4ZJI4 515 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 LIN52Q52LA3 116 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 C6orf52Q5T4I8 152 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 C9orf135Q5VTT2 229 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 PRAMEF8Q5VWM4 474 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 PRAMEF7Q5VXH5 474 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 CREB3L2Q70SY1 520 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 LINGO2Q7L985 606 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 AAED1Q7RTV5 226 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 EPHX4Q8IUS5 362 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 DEPDC4Q8N2C3 294 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ZNF525Q8N782 197 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 STK35Q8TDR2 534 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 GTF2H4Q92759 462 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 PROX1Q92786 737 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 BCL2L2Q92843 193 aaPredicted RBP10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 VPS33AQ96AX1 596 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 C3orf49Q96BT1 292 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 AURKBQ96GD4 344 aaPredicted RBP10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 PTDSS2Q9BVG9 487 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 SPATA9Q9BWV2 254 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 NELFAQ9H3P2 528 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 FKRPQ9H9S5 495 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 BCL2L10Q9HD36 194 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 P2RX2Q9UBL9 471 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 POU2F3Q9UKI9 436 aa10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ZNF443Q9Y2A4 671 aaPredicted RBP10.69□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 A0A096LPI6 279 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ARPC4-TTLL3A0A0A6YYG9 625 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 A0A0G2JPF8 293 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 HNRNPCL2B2RXH8 293 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 HNRNPCL3B7ZW38 293 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 RPL36A-HNRNPH2H7BZ11 118 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms