RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 HEATR5AQ86XA9 2040 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 PPP1R3DO95685 299 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CALCBP10092 127 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 HTR4Q13639 388 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 ST6GALNAC5Q9BVH7 336 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 FABP7O15540 132 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CT45A6P0DMU7 189 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CT45A5P0DMU8 189 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CT45A7P0DMV0 189 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CT45A8P0DMV1 189 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CT45A9P0DMV2 189 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 LAMP1P11279 417 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 FUT4P22083 530 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 ETV3P41162 512 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CT45A2Q5DJT8 189 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CT45A1Q5HYN5 189 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 SLC22A24Q8N4F4 322 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 GLIS1Q8NBF1 620 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CT45A3Q8NHU0 189 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CDS1Q92903 461 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 IL20RAQ9UHF4 553 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 DIMT1Q9UNQ2 313 aaKnown RBP12.45□□□□□ -0.42
COL6A3-209ENST00000472056 ANK1P16157 1881 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 SOX18P35713 384 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 ACY1Q03154 408 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 MKXQ8IYA7 352 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 TCTE3Q8IZS6 198 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 FAM213BQ8TBF2 198 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 PSMF1Q92530 271 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 SLC29A1Q99808 456 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 NTN4Q9HB63 628 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 DMRT3Q9NQL9 472 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 LOC105369274A0A096LPK9 316 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 P04436 131 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 C8orf89P0DMQ9 161 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 BMP4P12644 408 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 SUMO1P63165 101 aaKnown RBP12.45□□□□□ -0.42
COL6A3-209ENST00000472056 PHF19Q5T6S3 580 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 ZNF620Q6ZNG0 422 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 OR4N4Q8N0Y3 316 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 EGLN3Q9H6Z9 239 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 IFT22Q9H7X7 185 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CRLF2Q9HC73 371 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 AJAP1Q9UKB5 411 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-209ENST00000472056 B4DGG1 531 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 FOLR1P15328 257 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 MGMTP16455 207 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 TACR1P25103 407 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 SFTPDP35247 375 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 EMP2P54851 167 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 GPR18Q14330 331 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 MEP1BQ16820 701 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 SIGLECL1Q8N7X8 197 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 KHSRPQ92945 711 aaKnown RBP eCLIP12.44□□□□□ -0.42
COL6A3-209ENST00000472056 TMEM38AQ9H6F2 299 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 ARNT2Q9HBZ2 717 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 ATP1B1P05026 303 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 DBX2Q6ZNG2 339 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 CLRN3Q8NCR9 226 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 SGCZQ96LD1 299 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 DPH2Q9BQC3 489 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-209ENST00000472056 SLC7A7Q9UM01 511 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 HAPLN1P10915 354 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-209ENST00000472056 TGM1P22735 817 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 IVDP26440 423 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 GDNFP39905 211 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 OXA1LQ15070 435 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 OR4D6Q8NGJ1 314 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 KLHDC7BQ96G42 594 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 SLC41A2Q96JW4 573 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 CDH20Q9HBT6 801 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 GAR1Q9NY12 217 aaKnown RBP12.44□□□□□ -0.42
COL6A3-209ENST00000472056 MRPL15Q9P015 296 aaKnown RBP12.44□□□□□ -0.42
COL6A3-209ENST00000472056 GPR34Q9UPC5 381 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 PLCH1Q4KWH8 1693 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 ARRDC5A6NEK1 342 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 CNKSR3Q6P9H4 555 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 CD200R1Q8TD46 325 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 ELF4Q99607 663 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-209ENST00000472056 SPHK1Q9NYA1 384 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 ZNF230Q9UIE0 474 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-209ENST00000472056 RCE1Q9Y256 329 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 FAM155AB1AL88 458 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-209ENST00000472056 CHEK1O14757 476 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 CPN1P15169 458 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 RFC3P40938 356 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 PDZK1IP1Q13113 114 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 SFRP5Q5T4F7 317 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 IL34Q6ZMJ4 242 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 NAXEQ8NCW5 288 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 C14orf79Q96F83 325 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 DPH7Q9BTV6 452 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 INIPQ9NRY2 104 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 ADM5C9JUS6 153 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 NSA2O95478 260 aaKnown RBP12.44□□□□□ -0.42
COL6A3-209ENST00000472056 HNRNPA1P09651 372 aaKnown RBP eCLIP12.44□□□□□ -0.42
COL6A3-209ENST00000472056 SMPD1P17405 629 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 RABIFP47224 123 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 GUK1Q16774 197 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 ZNF610Q8N9Z0 462 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms