RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 TRMT61AQ96FX7 289 aaKnown RBP14.32□□□□□ -0.12
COL9A3-208ENST00000469802 PIF1Q9H611 641 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 SLCO1B3Q9NPD5 702 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 SLC52A3Q9NQ40 469 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 SLC25A37Q9NYZ2 338 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 GMEB1Q9Y692 573 aa14.32□□□□□ -0.12
COL9A3-208ENST00000469802 CHD3Q12873 2000 aaKnown RBP14.32□□□□□ -0.12
COL9A3-208ENST00000469802 CCT8L1PA6NM43 557 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 A8MVM7 634 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 CLIC1O00299 241 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 POLR3GO15318 223 aaPredicted RBP14.31□□□□□ -0.12
COL9A3-208ENST00000469802 FZD7O75084 574 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 AKR7A3O95154 331 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 IGHV4-39P01824 125 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 PTAFRP25105 342 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 CD40P25942 277 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 COPZ1P61923 177 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 SLC25A3Q00325 362 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 BNIP2Q12982 314 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 OR7A5Q15622 319 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 CLEC12BQ2HXU8 276 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 C1QTNF12Q5T7M4 302 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 BLOC1S3Q6QNY0 202 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 WDR31Q8NA23 367 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 MAL2Q969L2 176 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 GTPBP3Q969Y2 492 aaKnown RBP14.31□□□□□ -0.12
COL9A3-208ENST00000469802 BOD1Q96IK1 185 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 ZNF385AQ96PM9 386 aaKnown RBP14.31□□□□□ -0.12
COL9A3-208ENST00000469802 EBF4Q9BQW3 602 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 RSPO3Q9BXY4 272 aaPredicted RBP14.31□□□□□ -0.12
COL9A3-208ENST00000469802 SLCO5A1Q9H2Y9 848 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 RAD21L1Q9H4I0 556 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 FAIMQ9NVQ4 179 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 MGAT4BQ9UQ53 548 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 IFT52Q9Y366 437 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 JMJD1CQ15652 2540 aa14.31□□□□□ -0.12
COL9A3-208ENST00000469802 ARFGEF3Q5TH69 2177 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 TRBV5-3A0A0A0MS03 114 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 A0A1W2PR80 420 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 TMEM247A6NEH6 219 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 FTCDNL1E5RQL4 147 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 E7EQL1 145 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 IDH3AP50213 366 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 ZNF83P51522 516 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 STX1BP61266 288 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 VEZF1Q14119 521 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 ZNF311Q5JNZ3 666 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 C1orf140Q5VVS0 124 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 C11orf71Q6IPW1 123 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 KLHL17Q6TDP4 642 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 C6orf89Q6UWU4 347 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 B3GLCTQ6Y288 498 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 C10orf111Q8N326 155 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 GOLGA6L1Q8N7Z2 621 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 BBS10Q8TAM1 723 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 SLC17A5Q9NRA2 495 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 UPB1Q9UBR1 384 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 ZNF232Q9UNY5 417 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 YLPM1P49750 1951 aaKnown RBP14.3□□□□□ -0.12
COL9A3-208ENST00000469802 ABCA1O95477 2261 aa14.3□□□□□ -0.12
COL9A3-208ENST00000469802 SONP18583 2426 aaKnown RBP14.29□□□□□ -0.12
COL9A3-208ENST00000469802 NDUFS7O75251 213 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 ARAFP10398 606 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 ETS2P15036 469 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 MPGP29372 298 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 ACVR1BP36896 505 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 EGR4Q05215 589 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 TTMPQ5BVD1 217 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 C9orf135Q5VTT2 229 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 PIAS4Q8N2W9 510 aaPredicted RBP14.29□□□□□ -0.12
COL9A3-208ENST00000469802 POMGNT2Q8NAT1 580 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 STK35Q8TDR2 534 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 LRRC8CQ8TDW0 803 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 ATP6V1G3Q96LB4 118 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 CCDC28BQ9BUN5 200 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 PTDSS2Q9BVG9 487 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 ALG2Q9H553 416 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 ARMC7Q9H6L4 198 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 CACYBPQ9HB71 228 aaKnown RBP14.29□□□□□ -0.12
COL9A3-208ENST00000469802 TMEM45AQ9NWC5 275 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 ADPRHL2Q9NX46 363 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 SLAMF8Q9P0V8 285 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 GDF2Q9UK05 429 aaPredicted RBP14.29□□□□□ -0.12
COL9A3-208ENST00000469802 AMDHD2Q9Y303 409 aa14.29□□□□□ -0.12
COL9A3-208ENST00000469802 INAFM1C9JVW0 142 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 VAMP5O95183 116 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 NCF2P19878 526 aaPredicted RBP14.28□□□□□ -0.12
COL9A3-208ENST00000469802 PRKAR1BP31321 381 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 TTKP33981 857 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 TGFBR3Q03167 851 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 NRF1Q16656 503 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 PAGE3Q5JUK9 113 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 AGAP6Q5VW22 663 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 SLC22A25Q6T423 547 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 AAED1Q7RTV5 226 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 GPAT4Q86UL3 456 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 COMTD1Q86VU5 262 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 SPDL1Q96EA4 605 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 DHRS9Q9BPW9 319 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 TAPBPLQ9BX59 468 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms