RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 METTL4Q8N3J2 472 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 POC1AQ8NBT0 407 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 ZNF738Q8NE65 137 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 DDHD1Q8NEL9 900 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 GJC3Q8NFK1 279 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 OR10A7Q8NGE5 316 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 OR4A4PQ8NGN8 299 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 OR1J2Q8NGS2 313 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 OR13C5Q8NGS8 318 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 OR1F12Q8NHA8 337 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 SPATA22Q8NHS9 363 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 NANPQ8TBE9 248 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 TMEM163Q8TC26 289 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 DYNC2LI1Q8TCX1 351 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 MRGPRDQ8TDS7 321 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 MAFIPQ8WZ33 124 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 PYCR2Q96C36 320 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 RNF183Q96D59 192 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 ZC3HAV1LQ96H79 300 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 ZFP3Q96NJ6 502 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 ZNF385AQ96PM9 386 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 FRG2BQ96QU4 278 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 MBOAT4Q96T53 435 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 IL12RB2Q99665 862 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 GFI1Q99684 422 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 LRRC2Q9BYS8 371 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 HOXD1Q9GZZ0 328 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 C11orf49Q9H6J7 331 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 KIR3DX1Q9H7L2 352 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 GPN2Q9H9Y4 310 aaPredicted RBP4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 PLEKHA1Q9HB21 404 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 SEBOXQ9HB31 216 aaPredicted RBP4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 ABCB9Q9NP78 766 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 FBXO8Q9NRD0 319 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 ECHDC1Q9NTX5 307 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 C1orf109Q9NX04 203 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 OCIAD1Q9NX40 245 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 GPR83Q9NYM4 423 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 MAT2BQ9NZL9 334 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 OR14J1Q9UGF5 321 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 PRPF19Q9UMS4 504 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 PSG11Q9UQ72 335 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 ACOT9Q9Y305 439 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 TMED7Q9Y3B3 224 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 ZFYVE9O95405 1425 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 NUP160Q12769 1436 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 CNTLNQ9NXG0 1405 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 NUP155O75694 1391 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 CCNB3Q8WWL7 1395 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 ABCC11Q96J66 1382 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 RAB3GAP2Q9H2M9 1393 aa4.26□□□□□ -1.73
CCDC88A-210ENST00000468534 ATP10AO60312 1499 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 A0A0A0MQY5 61 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 TRAV24A0A0B4J272 114 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 A0A1W2PPV9 198 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 A0A1W2PRD5 423 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 NKX6-3A6NJ46 265 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 SHISA7A6NL88 538 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 VSTM2BA6NLU5 285 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 LRRC30A6NM36 301 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 FAM157AC9JC47 383 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 ARPC1BO15143 372 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 SLC16A4O15374 487 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 FADS1O60427 444 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 SLC19A2O60779 497 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 GATBO75879 557 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 SRP72O76094 671 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 RCBTB2O95199 551 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 FARS2O95363 451 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 HPRP00739 348 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 SERPINA1P01009 418 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 NR3C1P04150 777 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 HIST1H2AGP0C0S8 130 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 NBEAP1P0C6P0 100 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 LINC00614P0C842 121 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 MYL2P10916 166 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 ZNF43P17038 809 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 SRD5A1P18405 259 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 CD1CP29017 333 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 IDH2P48735 452 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 CYB561P49447 251 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 HILS1P60008 231 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 SEC61A1P61619 476 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 SP3Q02447 781 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 AESQ08117 197 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 CDH18Q13634 790 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 GRB7Q14451 532 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 EXOSC7Q15024 291 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 TAF1AQ15573 450 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 TOMM34Q15785 309 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 CDKN3Q16667 212 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 C2orf68Q2NKX9 166 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 EIF2S3LQ2VIR3 472 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 TRIM16LQ309B1 348 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 HLA-BQ31612 363 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 SAMD4BQ5PRF9 694 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 ACER2Q5QJU3 275 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 IDNKQ5T6J7 187 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 MARC1Q5VT66 337 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 NSUN5P2Q63ZY6 315 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms