RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 BNIP2Q12982 314 aa14.06□□□□□ -0.16
COL7A1-204ENST00000462475 STX3Q13277 289 aa14.06□□□□□ -0.16
COL7A1-204ENST00000462475 KLHL24Q6TFL4 600 aa14.06□□□□□ -0.16
COL7A1-204ENST00000462475 AAED1Q7RTV5 226 aa14.06□□□□□ -0.16
COL7A1-204ENST00000462475 VRK2Q86Y07 508 aa14.06□□□□□ -0.16
COL7A1-204ENST00000462475 KIRREL3Q8IZU9 778 aa14.06□□□□□ -0.16
COL7A1-204ENST00000462475 MREGQ8N565 214 aa14.06□□□□□ -0.16
COL7A1-204ENST00000462475 TMEM158Q8WZ71 300 aa14.06□□□□□ -0.16
COL7A1-204ENST00000462475 FBXO17Q96EF6 278 aa14.06□□□□□ -0.16
COL7A1-204ENST00000462475 KCNK17Q96T54 332 aa14.06□□□□□ -0.16
COL7A1-204ENST00000462475 SF3B5Q9BWJ5 86 aaKnown RBP14.06□□□□□ -0.16
COL7A1-204ENST00000462475 SLC6A13Q9NSD5 602 aa14.06□□□□□ -0.16
COL7A1-204ENST00000462475 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.06□□□□□ -0.16
COL7A1-204ENST00000462475 GPR45Q9Y5Y3 372 aa14.06□□□□□ -0.16
COL7A1-204ENST00000462475 V9GYY5 206 aaPredicted RBP14.06□□□□□ -0.16
COL7A1-204ENST00000462475 CDHR4A6H8M9 788 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 WNT11O96014 354 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 CSF3P09919 207 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 BMP4P12644 408 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 CXCR1P25024 350 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 ACAA2P42765 397 aaKnown RBP14.05□□□□□ -0.16
COL7A1-204ENST00000462475 P2RY4P51582 365 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 MVDP53602 400 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 GSTA3Q16772 222 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 SWI5Q1ZZU3 235 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 MST1LQ2TV78 715 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 WDR93Q6P2C0 686 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 GPAT4Q86UL3 456 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 PEX5LQ8IYB4 626 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 CADM2Q8N3J6 435 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 POMGNT2Q8NAT1 580 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 OR52P1PQ8NH57 321 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 PROX1Q92786 737 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 AURKBQ96GD4 344 aaPredicted RBP14.05□□□□□ -0.16
COL7A1-204ENST00000462475 SORCS2Q96PQ0 1159 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 ALKBH3Q96Q83 286 aaPredicted RBP14.05□□□□□ -0.16
COL7A1-204ENST00000462475 WDR55Q9H6Y2 383 aaPredicted RBP14.05□□□□□ -0.16
COL7A1-204ENST00000462475 TMEM160Q9NX00 188 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 ADPRHL2Q9NX46 363 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 PMF1-BGLAPU3KQ54 211 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 DSPPQ9NZW4 1301 aa14.05□□□□□ -0.16
COL7A1-204ENST00000462475 IGHV1-18A0A0C4DH31 117 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 FRS3O43559 492 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 LGI1O95970 557 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 F12P00748 615 aaPredicted RBP14.04□□□□□ -0.16
COL7A1-204ENST00000462475 PRG2P13727 222 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 USF1P22415 310 aaPredicted RBP14.04□□□□□ -0.16
COL7A1-204ENST00000462475 EPHA3P29320 983 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 SELENOPP49908 381 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 TBRG1Q3YBR2 411 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 LIN52Q52LA3 116 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 CYB5R2Q6BCY4 276 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 SPATA19Q7Z5L4 167 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 ZNF440Q8IYI8 595 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 ARIH2OSQ8N7S6 290 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 BEX2Q9BXY8 128 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 CENPHQ9H3R5 247 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 KCNK9Q9NPC2 374 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 P2RX2Q9UBL9 471 aa14.04□□□□□ -0.16
COL7A1-204ENST00000462475 VWC2LB2RUY7 222 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 RFXANKO14593 260 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 KRT75O95678 551 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 BCHEP06276 602 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 ETFAP13804 333 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 LSM11P83369 360 aaKnown RBP eCLIP14.03□□□□□ -0.16
COL7A1-204ENST00000462475 LRRC74AQ0VAA2 488 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 GGTLC2Q14390 218 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 GTDC1Q4AE62 458 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 TNFAIP8L3Q5GJ75 292 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 RPS26P11Q5JNZ5 115 aaPredicted RBP14.03□□□□□ -0.16
COL7A1-204ENST00000462475 C1QTNF12Q5T7M4 302 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 WBP2NLQ6ICG8 309 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 LINGO2Q7L985 606 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 OR1K1Q8NGR3 316 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 BOD1Q96IK1 185 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 SLC38A2Q96QD8 506 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 ZBTB18Q99592 522 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 PAIP2Q9BPZ3 127 aaKnown RBP14.03□□□□□ -0.16
COL7A1-204ENST00000462475 TAPBPLQ9BX59 468 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 PIF1Q9H611 641 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 ZNF443Q9Y2A4 671 aaPredicted RBP14.03□□□□□ -0.16
COL7A1-204ENST00000462475 CHST2Q9Y4C5 530 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 FKBP7Q9Y680 259 aa14.03□□□□□ -0.16
COL7A1-204ENST00000462475 A8MVM7 634 aa14.02□□□□□ -0.17
COL7A1-204ENST00000462475 ZNF587BE7ETH6 402 aa14.02□□□□□ -0.17
COL7A1-204ENST00000462475 UPK3AO75631 287 aa14.02□□□□□ -0.17
COL7A1-204ENST00000462475 KRT33AO76009 404 aa14.02□□□□□ -0.17
COL7A1-204ENST00000462475 IGFBP5P24593 272 aa14.02□□□□□ -0.17
COL7A1-204ENST00000462475 CRATP43155 626 aa14.02□□□□□ -0.17
COL7A1-204ENST00000462475 PDLIM4P50479 330 aa14.02□□□□□ -0.17
COL7A1-204ENST00000462475 COPZ1P61923 177 aa14.02□□□□□ -0.17
COL7A1-204ENST00000462475 SNRPD2P62316 118 aaKnown RBP14.02□□□□□ -0.17
COL7A1-204ENST00000462475 TUBA1BP68363 451 aa14.02□□□□□ -0.17
COL7A1-204ENST00000462475 TUBA4AP68366 448 aa14.02□□□□□ -0.17
COL7A1-204ENST00000462475 RNF220Q5VTB9 566 aa14.02□□□□□ -0.17
COL7A1-204ENST00000462475 C1orf140Q5VVS0 124 aa14.02□□□□□ -0.17
COL7A1-204ENST00000462475 PRAMEF8Q5VWM4 474 aa14.02□□□□□ -0.17
COL7A1-204ENST00000462475 PRAMEF7Q5VXH5 474 aa14.02□□□□□ -0.17
COL7A1-204ENST00000462475 TMEM225Q6GV28 225 aa14.02□□□□□ -0.17
COL7A1-204ENST00000462475 NIPAL3Q6P499 406 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms