RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ATP1B1P05026 303 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 QDPRP09417 244 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 SYPL2Q5VXT5 272 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 SLC35D2Q76EJ3 337 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 BAP18Q8IXM2 172 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 CABLES2Q9BTV7 478 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 ACTL8Q9H568 366 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 KLRF1Q9NZS2 232 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 KNG1P01042 644 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 SPP1P10451 314 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 RABIFP47224 123 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 PCBP4P57723 403 aaKnown RBP12.41□□□□□ -0.42
USP40-208ENST00000450966 DECR1Q16698 335 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 HSF5Q4G112 596 aaPredicted RBP12.41□□□□□ -0.42
USP40-208ENST00000450966 Q6ZVU0 165 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 PCYT2Q99447 389 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 SMOQ99835 787 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 NTMT1Q9BV86 223 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 MVB12BQ9H7P6 319 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 ASB6Q9NWX5 421 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 CTSFQ9UBX1 484 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 SLCO3A1Q9UIG8 710 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 LATO43561 262 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 GPR137BO60478 399 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 JTBO76095 146 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 GJB5O95377 273 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 HOXC13P31276 330 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 JAG1P78504 1218 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 SLC39A11Q8N1S5 342 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 OR6T1Q8NGN1 323 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 OR5P2Q8WZ92 322 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 OR2A14Q96R47 310 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 MMP26Q9NRE1 261 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 EMCNQ9ULC0 261 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 RNF144AP50876 292 aaPredicted RBP12.41□□□□□ -0.42
USP40-208ENST00000450966 CBLL1Q75N03 491 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 BTLAQ7Z6A9 289 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 OR52N2Q8NGI0 321 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 RBMXL1Q96E39 390 aaKnown RBP12.41□□□□□ -0.42
USP40-208ENST00000450966 RHOFQ9HBH0 211 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 TESQ9UGI8 421 aaKnown RBP12.41□□□□□ -0.42
USP40-208ENST00000450966 GPR52Q9Y2T5 361 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 PQLC2LA1A4F0 135 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 CSO75390 466 aaKnown RBP12.41□□□□□ -0.42
USP40-208ENST00000450966 SFTA3P0C7M3 94 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 SLC5A12Q1EHB4 618 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 FAM26DQ5JW98 314 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 PRR27Q6MZM9 219 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 LURAP1LQ8IV03 231 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 OR2T4Q8NH00 348 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 TFGQ92734 400 aaPredicted RBP12.41□□□□□ -0.42
USP40-208ENST00000450966 OR5M11Q96RB7 305 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 GPR61Q9BZJ8 451 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 RLIMQ9NVW2 624 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 WRAP73Q9P2S5 460 aaPredicted RBP12.41□□□□□ -0.42
USP40-208ENST00000450966 TAC3Q9UHF0 121 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 CA14Q9ULX7 337 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 TTC24A2A3L6 582 aaPredicted RBP12.4□□□□□ -0.42
USP40-208ENST00000450966 SLC6A9P48067 706 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 TAS2R60P59551 318 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 NPY5RQ15761 445 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 RTP2Q5QGT7 225 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 ZNF362Q5T0B9 420 aaPredicted RBP12.4□□□□□ -0.42
USP40-208ENST00000450966 CD300LGQ6UXG3 332 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 TCTEX1D1Q8N7M0 179 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 HERPUD2Q9BSE4 406 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 EVA1AQ9H8M9 152 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 NOSIPQ9Y314 301 aaKnown RBP12.4□□□□□ -0.42
USP40-208ENST00000450966 RNASEK-C17orf49H0YIS7 233 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 SGK494L7N484 410 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 COCHO43405 550 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 OR10A3P58181 314 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 ZNF74Q16587 644 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 SIRPB2Q5JXA9 342 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 LIPJQ5W064 366 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 NPY6RQ99463 290 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 SLIRPQ9GZT3 109 aaKnown RBP12.4□□□□□ -0.42
USP40-208ENST00000450966 AK4P27144 223 aaPredicted RBP12.4□□□□□ -0.42
USP40-208ENST00000450966 CCKARP32238 428 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 STK19P49842 368 aaPredicted RBP12.4□□□□□ -0.42
USP40-208ENST00000450966 ALKBH1Q13686 389 aaKnown RBP12.4□□□□□ -0.42
USP40-208ENST00000450966 TOMM20LQ6UXN7 152 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 ZSCAN4Q8NAM6 433 aaPredicted RBP12.4□□□□□ -0.42
USP40-208ENST00000450966 OR9K2Q8NGE7 335 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 MAL2Q969L2 176 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 RTP4Q96DX8 246 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 OR8D2Q9GZM6 311 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 MED9Q9NWA0 146 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 GPR45Q9Y5Y3 372 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 KDM3BQ7LBC6 1761 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 RTCAO00442 366 aaKnown RBP12.4□□□□□ -0.42
USP40-208ENST00000450966 IGHEP01854 428 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 KLK1P06870 262 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 AGTR2P50052 363 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 LTBQ06643 244 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 CAMK2DQ13557 499 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 DHCR24Q15392 516 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 ACOT6Q3I5F7 207 aaPredicted RBP12.4□□□□□ -0.42
USP40-208ENST00000450966 RPL22L1Q6P5R6 122 aaKnown RBP12.4□□□□□ -0.42
USP40-208ENST00000450966 TMEM65Q6PI78 240 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms