RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 ATP23Q9Y6H3 246 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 TRIM64A6NGJ6 449 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 TRIM64BA6NI03 449 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 ZNF716A6NP11 495 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 RAD51DO75771 328 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 AHSA1O95433 338 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 TFPTP0C1Z6 253 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 SLC25A16P16260 332 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 CCNA2P20248 432 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 RPS4Y1P22090 263 aaKnown RBP6.85□□□□□ -1.31
CD44-211ENST00000442151 CD40P25942 277 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 PCSK6P29122 969 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 APOBEC3AP31941 199 aaPredicted RBP6.85□□□□□ -1.31
CD44-211ENST00000442151 TTKP33981 857 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 RNF144AP50876 292 aaPredicted RBP6.85□□□□□ -1.31
CD44-211ENST00000442151 POLR2JP52435 117 aaKnown RBP6.85□□□□□ -1.31
CD44-211ENST00000442151 NUDT6P53370 316 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 SH3BGRP55822 239 aaPredicted RBP6.85□□□□□ -1.31
CD44-211ENST00000442151 GUCA2AQ02747 115 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 TSC22D1Q15714 1073 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 GABRA6Q16445 453 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 SYPL1Q16563 259 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 OTUD3Q5T2D3 398 aaPredicted RBP6.85□□□□□ -1.31
CD44-211ENST00000442151 RNF220Q5VTB9 566 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 PODNL1Q6PEZ8 512 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 Q71RC1 249 aaPredicted RBP6.85□□□□□ -1.31
CD44-211ENST00000442151 MUC15Q8N387 334 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 GOLGA6L1Q8N7Z2 621 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 ANKFN1Q8N957 763 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 IL17RDQ8NFM7 739 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 BBS10Q8TAM1 723 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 CNOT9Q92600 299 aaKnown RBP6.85□□□□□ -1.31
CD44-211ENST00000442151 PROX1Q92786 737 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 BOD1Q96IK1 185 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 SMR3AQ99954 134 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 INPP5KQ9BT40 448 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 SLCO5A1Q9H2Y9 848 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 ING1Q9UK53 422 aaPredicted RBP6.85□□□□□ -1.31
CD44-211ENST00000442151 SLC25A15Q9Y619 301 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 FKBP7Q9Y680 259 aa6.85□□□□□ -1.31
CD44-211ENST00000442151 AKAP6Q13023 2319 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 TMEM120BA0PK00 339 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 CDHR4A6H8M9 788 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 PRORSD1PA6NEY8 169 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 EVPLLA8MZ36 301 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 ZNF587BE7ETH6 402 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 M0R1B8 84 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 KLF11O14901 512 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 SNNO75324 88 aaPredicted RBP6.84□□□□□ -1.31
CD44-211ENST00000442151 KITP10721 976 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 PNMTP11086 282 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 ZNF83P51522 516 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 NME5P56597 212 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 PHC1P78364 1004 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 CEACAM7Q14002 265 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 SLC17A1Q14916 467 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 OR7A5Q15622 319 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 MRPL2Q5T653 305 aaKnown RBP6.84□□□□□ -1.31
CD44-211ENST00000442151 HMBOX1Q6NT76 420 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 UGT2A3Q6UWM9 527 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 SEZ6L2Q6UXD5 910 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 CADM2Q8N3J6 435 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 ZNF540Q8NDQ6 660 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 KBTBD8Q8NFY9 601 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 OR52N5Q8NH56 324 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 LILRB1Q8NHL6 650 aaPredicted RBP6.84□□□□□ -1.31
CD44-211ENST00000442151 MFSD8Q8NHS3 518 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 MAGEE2Q8TD90 523 aaPredicted RBP6.84□□□□□ -1.31
CD44-211ENST00000442151 DNAJA4Q8WW22 397 aaPredicted RBP6.84□□□□□ -1.31
CD44-211ENST00000442151 ARL5BQ96KC2 179 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 EPYCQ99645 322 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 KLHDC3Q9BQ90 382 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 RABEP2Q9H5N1 569 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 TPT1P8Q9HAU6 139 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 BCL2L10Q9HD36 194 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 SLC17A5Q9NRA2 495 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 LPAR3Q9UBY5 353 aa6.84□□□□□ -1.31
CD44-211ENST00000442151 NUP214P35658 2090 aaPredicted RBP6.84□□□□□ -1.31
CD44-211ENST00000442151 NF1P21359 2839 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 TMEM72A0PK05 275 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 LIPT2A6NK58 231 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 AQP7P3A6NL99 342 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 ELOA3DA6NLF2 546 aaPredicted RBP6.83□□□□□ -1.32
CD44-211ENST00000442151 SHISA9B4DS77 424 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 POLR3GO15318 223 aaPredicted RBP6.83□□□□□ -1.32
CD44-211ENST00000442151 CD5LO43866 347 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 CRLF1O75462 422 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 SERPINB7O75635 380 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 CRYAAP02489 173 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 GSNP06396 782 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 CHRM4P08173 479 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 SOD3P08294 240 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 ALDOCP09972 364 aaKnown RBP6.83□□□□□ -1.32
CD44-211ENST00000442151 ETS2P15036 469 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 EPHA3P29320 983 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 C1DQ13901 141 aaKnown RBP6.83□□□□□ -1.32
CD44-211ENST00000442151 ELOA3BQ3SY89 546 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 ZNF311Q5JNZ3 666 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 C6orf10Q5SRN2 563 aa6.83□□□□□ -1.32
CD44-211ENST00000442151 CCDC103Q8IW40 242 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms