RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ALPK1Q96QP1 1244 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 CIB1Q99828 191 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 NMNAT1Q9HAN9 279 aaPredicted RBP10.93□□□□□ -0.66
PTPRF-208ENST00000437607 ICAM5Q9UMF0 924 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 DSCAMO60469 2012 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 RAI1Q7Z5J4 1906 aaPredicted RBP10.92□□□□□ -0.66
PTPRF-208ENST00000437607 HSPB2A8KAH6 182 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 FFAR1O14842 300 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 TPST2O60704 377 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 ADAM11O75078 769 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 TRIM3O75382 744 aaPredicted RBP10.92□□□□□ -0.66
PTPRF-208ENST00000437607 BMP5P22003 454 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 DNASE1P24855 282 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 VHLP40337 213 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 PTDSS1P48651 473 aaKnown RBP10.92□□□□□ -0.66
PTPRF-208ENST00000437607 IDH2P48735 452 aaKnown RBP10.92□□□□□ -0.66
PTPRF-208ENST00000437607 ASCL1P50553 236 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 CRYZQ08257 329 aaKnown RBP10.92□□□□□ -0.66
PTPRF-208ENST00000437607 HSPB2Q16082 182 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 LRRC36Q1X8D7 754 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 FBXL19-AS1Q494R0 122 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 ACSF3Q4G176 576 aaPredicted RBP10.92□□□□□ -0.66
PTPRF-208ENST00000437607 OGFRL1Q5TC84 451 aaPredicted RBP10.92□□□□□ -0.66
PTPRF-208ENST00000437607 PAMR1Q6UXH9 720 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 ZNF730Q6ZMV8 503 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 TSPYL5Q86VY4 417 aaPredicted RBP10.92□□□□□ -0.66
PTPRF-208ENST00000437607 LSMEM1Q8N8F7 131 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 OR2M3Q8NG83 312 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 OR10G2Q8NGC3 310 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 OR1J4Q8NGS1 313 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 ST8SIA1Q92185 356 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 RNASE6Q93091 150 aaKnown RBP10.92□□□□□ -0.66
PTPRF-208ENST00000437607 MBD6Q96DN6 1003 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 MPP4Q96JB8 637 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 DSN1Q9H410 356 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 C8orf4Q9NR00 106 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 QPCTLQ9NXS2 382 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 MED11Q9P086 117 aa10.92□□□□□ -0.66
PTPRF-208ENST00000437607 FN1P02751 2386 aaKnown RBP10.92□□□□□ -0.66
PTPRF-208ENST00000437607 TRBV4-1A0A0J9YWV2 114 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 ARRDC5A6NEK1 342 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 ELOA3DA6NLF2 546 aaPredicted RBP10.91□□□□□ -0.66
PTPRF-208ENST00000437607 G3V2T6 193 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 EI24O14681 340 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 OR10H3O60404 316 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 PNMTP11086 282 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 IFNGR2P38484 337 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 SLC1A3P43003 542 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 UGT2B15P54855 530 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 FOXF1Q12946 379 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 PPP1R8Q12972 351 aaKnown RBP10.91□□□□□ -0.66
PTPRF-208ENST00000437607 LAPTM4AQ15012 233 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 DAZAP2Q15038 168 aaPredicted RBP10.91□□□□□ -0.66
PTPRF-208ENST00000437607 ELOA3BQ3SY89 546 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 OTUD3Q5T2D3 398 aaPredicted RBP10.91□□□□□ -0.66
PTPRF-208ENST00000437607 LPCAT4Q643R3 524 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 ULK3Q6PHR2 472 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 ZBTB49Q6ZSB9 765 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 RRM2BQ7LG56 351 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 GRINAQ7Z429 371 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 STK32CQ86UX6 486 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 LINC00471Q8N535 108 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 PACRGLQ8N7B6 248 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 FADS6Q8N9I5 356 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 ATG16L2Q8NAA4 619 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 ELOA3Q8NG57 546 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 OR4C15Q8NGM1 316 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 PIGXQ8TBF5 258 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 GIPC3Q8TF64 312 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 FAM222BQ8WU58 562 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 ACOT11Q8WXI4 607 aaPredicted RBP10.91□□□□□ -0.66
PTPRF-208ENST00000437607 C3orf49Q96BT1 292 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 C1GALT1C1Q96EU7 318 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 NRBF2Q96F24 287 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 RBM4BQ9BQ04 359 aaKnown RBP10.91□□□□□ -0.66
PTPRF-208ENST00000437607 RBM4Q9BWF3 364 aaKnown RBP10.91□□□□□ -0.66
PTPRF-208ENST00000437607 PRR14Q9BWN1 585 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 KLHL4Q9C0H6 718 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 GABARAPL1Q9H0R8 117 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 UBQLN3Q9H347 655 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 NTN4Q9HB63 628 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 MAN2C1Q9NTJ4 1040 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 MED17Q9NVC6 651 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 PDP1Q9P0J1 537 aaPredicted RBP10.91□□□□□ -0.66
PTPRF-208ENST00000437607 FBXL2Q9UKC9 423 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 PRDM4Q9UKN5 801 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 VDAC3Q9Y277 283 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 ORC6Q9Y5N6 252 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 TLN2Q9Y4G6 2542 aa10.91□□□□□ -0.66
PTPRF-208ENST00000437607 A0A087WZY1 265 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 AHRRA9YTQ3 701 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 PDLIM1O00151 329 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 DVL2O14641 736 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 ATE1O95260 518 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 HPRP00739 348 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 FOSL1P15407 271 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 PTNP21246 168 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 GDF1P27539 372 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 TIMP3P35625 211 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 PEX19P40855 299 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms