RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 RFXANKO14593 260 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 KRT75O95678 551 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 NCF2P19878 526 aaPredicted RBP12.7□□□□□ -0.38
SDC1-204ENST00000429035 RPS4Y1P22090 263 aaKnown RBP12.7□□□□□ -0.38
SDC1-204ENST00000429035 EPHA3P29320 983 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 PRPS1P60891 318 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 COPZ1P61923 177 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 H3F3AP84243 136 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 GGTLC2Q14390 218 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 RPS26P11Q5JNZ5 115 aaPredicted RBP12.7□□□□□ -0.38
SDC1-204ENST00000429035 HHATQ5VTY9 493 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 OGFOD2Q6N063 350 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 VHLLQ6RSH7 139 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 ABHD12BQ7Z5M8 362 aaPredicted RBP12.7□□□□□ -0.38
SDC1-204ENST00000429035 ZNF440Q8IYI8 595 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 LRRC34Q8IZ02 419 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 OR52P1PQ8NH57 321 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 C3orf49Q96BT1 292 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 AURKBQ96GD4 344 aaPredicted RBP12.7□□□□□ -0.38
SDC1-204ENST00000429035 AMBRA1Q9C0C7 1298 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 WDR55Q9H6Y2 383 aaPredicted RBP12.7□□□□□ -0.38
SDC1-204ENST00000429035 CHODLQ9H9P2 273 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 SSU72Q9NP77 194 aaKnown RBP12.7□□□□□ -0.38
SDC1-204ENST00000429035 CDC42EP3Q9UKI2 254 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 ZNF443Q9Y2A4 671 aaPredicted RBP12.7□□□□□ -0.38
SDC1-204ENST00000429035 FKBP7Q9Y680 259 aa12.7□□□□□ -0.38
SDC1-204ENST00000429035 LIPT2A6NK58 231 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 ZNF587BE7ETH6 402 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 FRS3O43559 492 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 LGI1O95970 557 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 CSF3P09919 207 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 ETFAP13804 333 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 GTF2E2P29084 291 aaKnown RBP12.69□□□□□ -0.38
SDC1-204ENST00000429035 APOBEC3AP31941 199 aaPredicted RBP12.69□□□□□ -0.38
SDC1-204ENST00000429035 CRATP43155 626 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 UBE2NP61088 152 aaKnown RBP12.69□□□□□ -0.38
SDC1-204ENST00000429035 SNRPD2P62316 118 aaKnown RBP12.69□□□□□ -0.38
SDC1-204ENST00000429035 TXNL4AP83876 142 aaKnown RBP12.69□□□□□ -0.38
SDC1-204ENST00000429035 VLDLRP98155 873 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 LGALS3BPQ08380 585 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 LOXL1Q08397 574 aaPredicted RBP12.69□□□□□ -0.38
SDC1-204ENST00000429035 PRAMEF8Q5VWM4 474 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 PRAMEF7Q5VXH5 474 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 ATG16L1Q676U5 607 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 TMEM225Q6GV28 225 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 WDR93Q6P2C0 686 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 NIPAL3Q6P499 406 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 SPATA19Q7Z5L4 167 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 POMGNT2Q8NAT1 580 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 C10orf105Q8TEF2 133 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 TMEM158Q8WZ71 300 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 TMEM45BQ96B21 275 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 MTHFD2LQ9H903 347 aaPredicted RBP12.69□□□□□ -0.38
SDC1-204ENST00000429035 HAO1Q9UJM8 370 aa12.69□□□□□ -0.38
SDC1-204ENST00000429035 FBN1P35555 2871 aaKnown RBP12.68□□□□□ -0.38
SDC1-204ENST00000429035 TMEM247A6NEH6 219 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 AQP7P3A6NL99 342 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 ELOA3DA6NLF2 546 aaPredicted RBP12.68□□□□□ -0.38
SDC1-204ENST00000429035 FAAHO00519 579 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 PHF1O43189 567 aaPredicted RBP12.68□□□□□ -0.38
SDC1-204ENST00000429035 FAM157CP0CG43 387 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 IGHV4-31P0DP07 118 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 USF1P22415 310 aaPredicted RBP12.68□□□□□ -0.38
SDC1-204ENST00000429035 SELENOPP49908 381 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 PDLIM4P50479 330 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 EFNA4P52798 201 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 CRISP3P54108 245 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 DSTNP60981 165 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 TUBA1BP68363 451 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 TUBA4AP68366 448 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 LRRC74AQ0VAA2 488 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 ELOA3BQ3SY89 546 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 TBRG1Q3YBR2 411 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 GTDC1Q4AE62 458 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 CYB5R2Q6BCY4 276 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 WBP2NLQ6ICG8 309 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 IL17RELQ6ZVW7 336 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 TUBA1AQ71U36 451 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 SLC46A3Q7Z3Q1 461 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 MREGQ8N565 214 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 ELOA3Q8NG57 546 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 NANOS1Q8WY41 292 aaKnown RBP12.68□□□□□ -0.38
SDC1-204ENST00000429035 SORCS2Q96PQ0 1159 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 VRK1Q99986 396 aaPredicted RBP12.68□□□□□ -0.38
SDC1-204ENST00000429035 PIMREGQ9BSJ6 248 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 BEX2Q9BXY8 128 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 SHARPINQ9H0F6 387 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 CALML5Q9NZT1 146 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 FBN3Q75N90 2809 aa12.68□□□□□ -0.38
SDC1-204ENST00000429035 A0A096LPE4 126 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 IGHV1-18A0A0C4DH31 117 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 A0A1W2PPZ6 126 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 CDHR4A6H8M9 788 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 TRPC5OSA6NMA1 111 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 AHSA1O95433 338 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 MAP2K6P52564 334 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 IL1RL1Q01638 556 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 MPP2Q14168 576 aa12.67□□□□□ -0.38
SDC1-204ENST00000429035 LARS2Q15031 903 aaKnown RBP12.67□□□□□ -0.38
SDC1-204ENST00000429035 GSTA3Q16772 222 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms