RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 B3GALT5-AS1P59052 145 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 C1DQ13901 141 aaKnown RBP9.09□□□□□ -0.95
CD44-207ENST00000425428 ZNF74Q16587 644 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 LRRC36Q1X8D7 754 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 HMBOX1Q6NT76 420 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 TBPL2Q6SJ96 375 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 PRICKLE2Q7Z3G6 844 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 HDDC2Q7Z4H3 204 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 P3H2Q8IVL5 708 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 SIAH3Q8IW03 269 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 SLC43A2Q8N370 569 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 SCAIQ8N9R8 606 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 Q8NA96 180 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 ZNF555Q8NEP9 628 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 OR9Q2Q8NGE9 314 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 OR5J2Q8NH18 312 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 TEX47Q8TBZ9 253 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 SLC39A7Q92504 469 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 MIB2Q96AX9 1013 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 KTI12Q96EK9 354 aaPredicted RBP9.09□□□□□ -0.95
CD44-207ENST00000425428 TIMP4Q99727 224 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 PSD2Q9BQI7 771 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 DGCR6LQ9BY27 220 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 ASF1BQ9NVP2 202 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 B3GALT5Q9Y2C3 310 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 CFAP47Q6ZTR5 3102 aa9.09□□□□□ -0.96
CD44-207ENST00000425428 LOC400499M0QZD8 3231 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 KIAA1549Q9HCM3 1950 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 ZGRF1Q86YA3 2104 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 LIPT2A6NK58 231 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 RNF13O43567 381 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 WDR1O75083 606 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 PLGP00747 810 aaPredicted RBP9.08□□□□□ -0.96
CD44-207ENST00000425428 GASTP01350 101 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 THY1P04216 161 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 ADORA3P0DMS8 318 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 CBLP22681 906 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 NOS3P29474 1203 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 LHX2P50458 406 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 TPD52P55327 224 aaPredicted RBP9.08□□□□□ -0.96
CD44-207ENST00000425428 DAG1Q14118 895 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 LAPTM4AQ15012 233 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 SEC23BQ15437 767 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 ZBED5Q49AG3 693 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 ZNF585AQ6P3V2 769 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 PGBD2Q6P3X8 592 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 PAQR6Q6TCH4 344 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 WDR88Q6ZMY6 472 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 H1FNTQ75WM6 255 aaPredicted RBP9.08□□□□□ -0.96
CD44-207ENST00000425428 TSPYL5Q86VY4 417 aaPredicted RBP9.08□□□□□ -0.96
CD44-207ENST00000425428 CBR4Q8N4T8 237 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 OR10D3Q8NH80 312 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 FANK1Q8TC84 345 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 TAAR8Q969N4 342 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 RDH12Q96NR8 316 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 GABARAPL1Q9H0R8 117 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 NTN4Q9HB63 628 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 CHST11Q9NPF2 352 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 MRPL39Q9NYK5 338 aaKnown RBP9.08□□□□□ -0.96
CD44-207ENST00000425428 EMC3Q9P0I2 261 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 RASD1Q9Y272 281 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 HRH3Q9Y5N1 445 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 LIPGQ9Y5X9 500 aa9.08□□□□□ -0.96
CD44-207ENST00000425428 DSPP15924 2871 aaKnown RBP9.07□□□□□ -0.96
CD44-207ENST00000425428 A0A0J9YW62 118 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 A0A1W2PRG6 482 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 ZC3H12DA2A288 527 aaKnown RBP9.07□□□□□ -0.96
CD44-207ENST00000425428 B4DXG7 233 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 PDLIM1O00151 329 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 CASQ2O14958 399 aaPredicted RBP9.07□□□□□ -0.96
CD44-207ENST00000425428 CXCL13O43927 109 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 PIP5K1CO60331 668 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 NDUFB2O95178 105 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 LYPD3O95274 346 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 PRKACGP22612 351 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 POU1F1P28069 291 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 GRPRP30550 384 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 SLC6A6P31641 620 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 VHLP40337 213 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 OMPP47874 163 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 HSPA13P48723 471 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 CLDN20P56880 219 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 ESRRGP62508 458 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 FOXK1P85037 733 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 EGR4Q05215 589 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 RNPS1Q15287 305 aaKnown RBP9.07□□□□□ -0.96
CD44-207ENST00000425428 OR2A2Q6IF42 318 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 SMARCD3Q6STE5 483 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 ZER1Q7Z7L7 766 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 GPAT4Q86UL3 456 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 ATCAYQ86WG3 371 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 GALNT4Q8N4A0 578 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 ZPLD1Q8TCW7 415 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 RELTQ969Z4 430 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 ARL5BQ96KC2 179 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 KLHDC3Q9BQ90 382 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 TACO1Q9BSH4 297 aaKnown RBP9.07□□□□□ -0.96
CD44-207ENST00000425428 TP63Q9H3D4 680 aaPredicted RBP9.07□□□□□ -0.96
CD44-207ENST00000425428 MEPEQ9NQ76 525 aaPredicted RBP9.07□□□□□ -0.96
CD44-207ENST00000425428 TBC1D23Q9NUY8 699 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms