RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ZNF703Q9H7S9 590 aaPredicted RBP15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 SLC25A19Q9HC21 320 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 SIGLEC7Q9Y286 467 aa15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 MRPS18CQ9Y3D5 142 aaKnown RBP15.47■□□□□ 0.07
CCDC28B-202ENST00000421922 BLOC1S5-TXNDC5H3BN57 136 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 MPZL2O60487 215 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 TP53P04637 393 aaPredicted RBP15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 HMGN1P05114 100 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 SFTPDP35247 375 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 RFC3P40938 356 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 CLK1P49759 484 aaKnown RBP15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 CHN2P52757 468 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 PRPS1P60891 318 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 FOXO1Q12778 655 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 PGGHGQ32M88 737 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 PTCHD4Q6ZW05 846 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 ZNF786Q8N393 782 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 FAM83FQ8NEG4 500 aaPredicted RBP15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 OR6S1Q8NH40 331 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 RELTQ969Z4 430 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 MOGAT1Q96PD6 335 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 OR5B2Q96R09 309 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 TNFRSF13CQ96RJ3 184 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 TVP23BQ9NYZ1 205 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 BAIAP2Q9UQB8 552 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 CORINQ9Y5Q5 1042 aa15.46■□□□□ 0.07
CCDC28B-202ENST00000421922 FREM3P0C091 2139 aa15.46■□□□□ 0.06
CCDC28B-202ENST00000421922 ZIC3O60481 467 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 NPIPB7O75200 414 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 BGLAPP02818 100 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 RFPL3SP0C7P2 107 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 NOS3P29474 1203 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 GIPRP48546 466 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 OR7A5Q15622 319 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 SNAPC1Q16533 368 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 WIPI1Q5MNZ9 446 aaPredicted RBP15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 SLC6A19Q695T7 634 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 LSRQ86X29 649 aaPredicted RBP15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 LRRC17Q8N6Y2 441 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 OR8D4Q8NGM9 314 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 OR5J2Q8NH18 312 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 MFSD8Q8NHS3 518 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 LIPHQ8WWY8 451 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 ZCCHC14Q8WYQ9 949 aaKnown RBP15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 UBQLN3Q9H347 655 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 RASSF1Q9NS23 344 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 UBAP1Q9NZ09 502 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 IL20RAQ9UHF4 553 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 HDGFL3Q9Y3E1 203 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 PCDHGB7Q9Y5F8 929 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 NCKAP5O14513 1909 aa15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 TNRC6AQ8NDV7 1962 aaKnown RBP15.45■□□□□ 0.06
CCDC28B-202ENST00000421922 LINC01387J3KSC0 135 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 TNFAIP8O95379 198 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 WISP1O95388 367 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 ASAH2BP0C7U1 165 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 POU3F2P20265 443 aaPredicted RBP15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 IL11P20809 199 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 GRPRP30550 384 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 OR2B6P58173 313 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 PPIAP62937 165 aaKnown RBP15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 CXADRP78310 365 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 CDK5Q00535 292 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 PMS2P3Q13401 168 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 TMEM176BQ3YBM2 270 aaPredicted RBP15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 C1QL3Q5VWW1 255 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 C12orf73Q69YU5 71 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 PTDSS2Q9BVG9 487 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 EXO5Q9H790 373 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 MCCC2Q9HCC0 563 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 QPCTLQ9NXS2 382 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 ALKBH4Q9NXW9 302 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 BLOC1S6Q9UL45 172 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 RNF6Q9Y252 685 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 MYRFQ9Y2G1 1151 aa15.44■□□□□ 0.06
CCDC28B-202ENST00000421922 PTP4A3O75365 173 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 IFNGP01579 166 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 OPN1LWP04000 364 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 HPNP05981 417 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 GRK5P34947 590 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 MAGEA5P43359 124 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 RAC1P63000 192 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 FOXK1P85037 733 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 MYBPC1Q00872 1141 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 CD47Q08722 323 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 MYBPHQ13203 477 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 TOP3AQ13472 1001 aaPredicted RBP15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 MAD2L1BPQ15013 274 aaPredicted RBP15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 TMEM44Q2T9K0 475 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 GXYLT1Q4G148 440 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 ALG10Q5BKT4 473 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 ARHGAP11AQ6P4F7 1023 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 FAM109AQ8N4B1 249 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 TMEM251Q8N6I4 163 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 ZFP62Q8NB50 900 aaPredicted RBP15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 TRUB1Q8WWH5 349 aaKnown RBP15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 ARL5BQ96KC2 179 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 UBL7Q96S82 380 aaPredicted RBP15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 CLN6Q9NWW5 311 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms