RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 RASGEF1BQ0VAM2 473 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 PIN1Q13526 163 aaPredicted RBP11.11□□□□□ -0.63
SKA1-203ENST00000417656 FBXL19-AS1Q494R0 122 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 TMEM201Q5SNT2 666 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 OTUD3Q5T2D3 398 aaPredicted RBP11.11□□□□□ -0.63
SKA1-203ENST00000417656 EEF1A1P5Q5VTE0 462 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 GTF2IRD2BQ6EKJ0 949 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 PAQR6Q6TCH4 344 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 FKBP9P1Q75LS8 142 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 GDF7Q7Z4P5 450 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 GTF2IRD2Q86UP8 949 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 CCDC103Q8IW40 242 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 PIGXQ8TBF5 258 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 SLC25A36Q96CQ1 311 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 SLC41A3Q96GZ6 507 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 PRRC1Q96M27 445 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 NSMCE2Q96MF7 247 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 TMEM43Q9BTV4 400 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 AMBRA1Q9C0C7 1298 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 CHST11Q9NPF2 352 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 GLRX2Q9NS18 164 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 DCAF13Q9NV06 445 aaKnown RBP11.11□□□□□ -0.63
SKA1-203ENST00000417656 GALNT8Q9NY28 637 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 TAS2R1Q9NYW7 299 aa11.11□□□□□ -0.63
SKA1-203ENST00000417656 PRPF19Q9UMS4 504 aaKnown RBP11.11□□□□□ -0.63
SKA1-203ENST00000417656 SAMD4AQ9UPU9 718 aaKnown RBP11.11□□□□□ -0.63
SKA1-203ENST00000417656 TRAV36DV7A0A075B6V5 113 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 AQP7P3A6NL99 342 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 J3KTA2 159 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 KPNA4O00629 521 aaPredicted RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 MSTNO14793 375 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 EIF1BO60739 113 aaKnown RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 OR5F1O95221 314 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 CGAP01215 116 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 CD8BP10966 210 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 CBLP22681 906 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 GTF2E2P29084 291 aaKnown RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 YAP1P46937 504 aaKnown RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 H3F3AP84243 136 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 FOXD4Q12950 439 aaPredicted RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 SNTB1Q13884 538 aaKnown RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 SPATS1Q496A3 300 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 ZNF787Q6DD87 383 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 C5orf46Q6UWT4 87 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 THSD4Q6ZMP0 1018 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 MEX3BQ6ZN04 569 aaKnown RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 NUFIP2Q7Z417 695 aaKnown RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 ARHGAP24Q8N264 748 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 TMEM99Q8N816 258 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 MFSD8Q8NHS3 518 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 RNASE6Q93091 150 aaKnown RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 TAAR8Q969N4 342 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 ZNF775Q96BV0 537 aaPredicted RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 CCDC124Q96CT7 223 aaKnown RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 CLPTM1LQ96KA5 538 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 EPYCQ99645 322 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 PRSS27Q9BQR3 290 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 TACO1Q9BSH4 297 aaKnown RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 NAA11Q9BSU3 229 aaPredicted RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 RBM24Q9BX46 236 aaKnown RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 POLR2J2Q9GZM3 115 aaKnown RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 POLR2J3Q9H1A7 115 aaKnown RBP11.1□□□□□ -0.63
SKA1-203ENST00000417656 C1orf21Q9H246 121 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 GORASP2Q9H8Y8 452 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 BCO1Q9HAY6 547 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 GP6Q9HCN6 339 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 SEC14L4Q9UDX3 406 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 A4GNTQ9UNA3 340 aa11.1□□□□□ -0.63
SKA1-203ENST00000417656 IGKV3D-15A0A087WSY6 115 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 ZNF724A8MTY0 619 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 LRRN3E7EW58 273 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 M0R082 166 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 FZD7O75084 574 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 BGLAPP02818 100 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 YES1P07947 543 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 IGFBP2P18065 325 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 FUT4P22083 530 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 EDNRAP25101 427 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 GRPRP30550 384 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 P2RY4P51582 365 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 SLC16A1P53985 500 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 DNAL1Q4LDG9 190 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 FAM69AQ5T7M9 428 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 SP5Q6BEB4 398 aaPredicted RBP11.09□□□□□ -0.63
SKA1-203ENST00000417656 TTC33Q6PID6 262 aaPredicted RBP11.09□□□□□ -0.63
SKA1-203ENST00000417656 ZNF474Q6S9Z5 364 aaPredicted RBP11.09□□□□□ -0.63
SKA1-203ENST00000417656 TFAP2EQ6VUC0 442 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 CYP2R1Q6VVX0 501 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 LINC00114Q6XXX2 140 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 NKAIN4Q8IVV8 208 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 OFCC1Q8IZS5 231 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 C10orf53Q8N6V4 93 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 ZNF610Q8N9Z0 462 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 ZNF417Q8TAU3 575 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 TMEM255BQ8WV15 326 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 SLC7A6OSQ96CW6 309 aaPredicted RBP11.09□□□□□ -0.63
SKA1-203ENST00000417656 LRRC46Q96FV0 321 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 MPP4Q96JB8 637 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 MOGAT1Q96PD6 335 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms