RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ARG2P78540 354 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 TIGITQ495A1 244 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 PLD6Q8N2A8 252 aaKnown RBP12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 S1PR3Q99500 378 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 OR6C76A6NM76 312 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 C4orf47A7E2U8 309 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 F2P00734 622 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 MMP7P09237 267 aaPredicted RBP12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 GRM7Q14831 915 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 RAB6CQ53S08 254 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 ZNF322Q6U7Q0 402 aaPredicted RBP12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 TIFABQ6ZNK6 161 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 USP50Q70EL3 339 aaPredicted RBP12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 OR51L1Q8NGJ5 315 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 OR5K2Q8NHB8 316 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 BRI3BPQ8WY22 251 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 SFXN2Q96NB2 322 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 PADI3Q9ULW8 664 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 AHSGP02765 367 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 PTAFRP25105 342 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 NPY1RP25929 384 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 RPS24P62847 133 aaKnown RBP12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 BAK1Q16611 211 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 FKBP1CQ5VVH2 108 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 MACROD1Q9BQ69 325 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 TMEM43Q9BTV4 400 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 DPH1Q9BZG8 443 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 ELLP55199 621 aaPredicted RBP12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 UBE2IP63279 158 aaKnown RBP12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 TMEM115Q12893 351 aaPredicted RBP12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 RPE65Q16518 533 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 LTC4SQ16873 150 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 SIAH1Q8IUQ4 282 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 SLCO2A1Q92959 643 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 RAB6CQ9H0N0 254 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 A0A1W2PQ09 198 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 PHF1O43189 567 aaPredicted RBP12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 DDAH2O95865 285 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 HCCSP53701 268 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 TAS2R45P59539 299 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 CNEP1R1Q8N9A8 125 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 METTL9Q9H1A3 318 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 PISDQ9UG56 409 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 ZNF281Q9Y2X9 895 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 HRH3Q9Y5N1 445 aa12.5□□□□□ -0.41
CCDC88A-204ENST00000413716 ATRNL1Q5VV63 1379 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 KDM4FA0A1W2PPD8 638 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 NKX6-3A6NJ46 265 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 SLC51BQ86UW2 128 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 FBXL2Q9UKC9 423 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 ARHGEF28Q8N1W1 1705 aaKnown RBP12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 FEZF1A0PJY2 475 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 YJEFN3A6XGL0 299 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 CXCR4P61073 352 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 CPOQ8IVL8 374 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 PIGCQ92535 297 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 PKMYT1Q99640 499 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 LHX6Q9UPM6 363 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 A0A1W2PRU2 124 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 TCRBV5S4A2TA0A5A2 114 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 C5orf52A6NGY3 159 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 TIMM8AO60220 97 aaPredicted RBP12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 H2AFB1P0C5Y9 115 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 H2BFWTQ7Z2G1 175 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 C20orf85Q9H1P6 137 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 NECAP2Q9NVZ3 263 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 FBXO45P0C2W1 286 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 LGALS4P56470 323 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 THEM4Q5T1C6 240 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 ZNF765Q7L2R6 523 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 DNAJC5GQ8N7S2 189 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 TVP23CQ96ET8 276 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 UBQLN4Q9NRR5 601 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 CNIH4Q9P003 139 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 BMPR1BO00238 502 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 BMPR1AP36894 532 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 GNB1P62873 340 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 LBHQ53QV2 105 aaPredicted RBP12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 CD200R1Q8TD46 325 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 HLA-CQ95604 372 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 NMNAT1Q9HAN9 279 aaPredicted RBP12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 SLC35A3Q9Y2D2 325 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 PMS2P1A4D2B8 440 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 FAM171A2A8MVW0 826 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 GABRA5P31644 462 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 PLXDC1Q8IUK5 500 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 DUSP19Q8WTR2 217 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 HEYLQ9NQ87 328 aaPredicted RBP12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 GABRQQ9UN88 632 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 MROH2AA6NES4 1674 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 APH1BQ8WW43 257 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 CABLES2Q9BTV7 478 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 INTS6Q9UL03 887 aaKnown RBP12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 ATG2BQ96BY7 2078 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 ADM5C9JUS6 153 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 NXPH3O95157 252 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 POU3F2P20265 443 aaPredicted RBP12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 RPS26P11Q5JNZ5 115 aaPredicted RBP12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 OR5A2Q8NGI9 324 aa12.49□□□□□ -0.41
CCDC88A-204ENST00000413716 SLC12A9Q9BXP2 914 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms