RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 HIPK4Q8NE63 616 aa16.79■□□□□ 0.28
SF3A1-202ENST00000411423 OR9K2Q8NGE7 335 aa16.79■□□□□ 0.28
SF3A1-202ENST00000411423 STK35Q8TDR2 534 aa16.79■□□□□ 0.28
SF3A1-202ENST00000411423 ARMC7Q9H6L4 198 aa16.79■□□□□ 0.28
SF3A1-202ENST00000411423 KAT8Q9H7Z6 458 aaKnown RBP16.79■□□□□ 0.28
SF3A1-202ENST00000411423 CACYBPQ9HB71 228 aaKnown RBP16.79■□□□□ 0.28
SF3A1-202ENST00000411423 SAR1AQ9NR31 198 aa16.79■□□□□ 0.28
SF3A1-202ENST00000411423 DLL4Q9NR61 685 aa16.79■□□□□ 0.28
SF3A1-202ENST00000411423 MALT1Q9UDY8 824 aa16.79■□□□□ 0.28
SF3A1-202ENST00000411423 PRDM4Q9UKN5 801 aa16.79■□□□□ 0.28
SF3A1-202ENST00000411423 USP22Q9UPT9 525 aa16.79■□□□□ 0.28
SF3A1-202ENST00000411423 CORO2BQ9UQ03 480 aa16.79■□□□□ 0.28
SF3A1-202ENST00000411423 A0A1W2PR80 420 aa16.78■□□□□ 0.28
SF3A1-202ENST00000411423 CD99P14209 185 aa16.78■□□□□ 0.28
SF3A1-202ENST00000411423 PTNP21246 168 aa16.78■□□□□ 0.28
SF3A1-202ENST00000411423 RPS5P46782 204 aaKnown RBP16.78■□□□□ 0.28
SF3A1-202ENST00000411423 NR1H2P55055 460 aa16.78■□□□□ 0.28
SF3A1-202ENST00000411423 LGALS3BPQ08380 585 aa16.78■□□□□ 0.28
SF3A1-202ENST00000411423 KLF10Q13118 480 aa16.78■□□□□ 0.28
SF3A1-202ENST00000411423 DUSP7Q16829 419 aa16.78■□□□□ 0.28
SF3A1-202ENST00000411423 C9orf135Q5VTT2 229 aa16.78■□□□□ 0.28
SF3A1-202ENST00000411423 KRT73Q86Y46 540 aa16.78■□□□□ 0.28
SF3A1-202ENST00000411423 KDM8Q8N371 416 aa16.78■□□□□ 0.28
SF3A1-202ENST00000411423 OR4D11Q8NGI4 311 aa16.78■□□□□ 0.28
SF3A1-202ENST00000411423 AKAP1Q92667 903 aaKnown RBP eCLIP16.78■□□□□ 0.28
SF3A1-202ENST00000411423 CCL19Q99731 98 aa16.78■□□□□ 0.28
SF3A1-202ENST00000411423 PIP5K1AQ99755 562 aa16.78■□□□□ 0.28
SF3A1-202ENST00000411423 CCDC134Q9H6E4 229 aa16.78■□□□□ 0.28
SF3A1-202ENST00000411423 OR5H1A6NKK0 313 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 M0R3H8 397 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 FZD7O75084 574 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 VIMP08670 466 aaKnown RBP16.77■□□□□ 0.28
SF3A1-202ENST00000411423 TROVE2P10155 538 aaKnown RBP eCLIP16.77■□□□□ 0.28
SF3A1-202ENST00000411423 GGT1P19440 569 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 PPA1Q15181 289 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 NPTX1Q15818 432 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 GABRA6Q16445 453 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 CYP51A1Q16850 503 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 RABL3Q5HYI8 236 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 TIMM23BQ5SRD1 257 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 TSPYL5Q86VY4 417 aaPredicted RBP16.77■□□□□ 0.28
SF3A1-202ENST00000411423 ARMC8Q8IUR7 673 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 EPHX4Q8IUS5 362 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 C11orf65Q8NCR3 313 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 KBTBD8Q8NFY9 601 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 OR10A6Q8NH74 314 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 TAAR8Q969N4 342 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 TMEM45BQ96B21 275 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 SLC25A36Q96CQ1 311 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 ARHGDIGQ99819 225 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 SPATA5L1Q9BVQ7 753 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 PIF1Q9H611 641 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 ANGPT4Q9Y264 503 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 SLC9A8Q9Y2E8 581 aa16.77■□□□□ 0.28
SF3A1-202ENST00000411423 DSCAMO60469 2012 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 ELOA3DA6NLF2 546 aaPredicted RBP16.76■□□□□ 0.27
SF3A1-202ENST00000411423 M0QX08 132 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 HS3ST1O14792 307 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 PNMTP11086 282 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 CD247P20963 164 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 NKX6-1P78426 367 aaPredicted RBP16.76■□□□□ 0.27
SF3A1-202ENST00000411423 SLC25A3Q00325 362 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 LTBQ06643 244 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 BSPH1Q075Z2 132 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 RBBP4Q09028 425 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 OR1Q1Q15612 314 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 TRMT5Q32P41 509 aaKnown RBP16.76■□□□□ 0.27
SF3A1-202ENST00000411423 ELOA3BQ3SY89 546 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 REP15Q6BDI9 236 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 NANOGP8Q6NSW7 305 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 C20orf204Q6ZNR8 217 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 CREB3L2Q70SY1 520 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 LINGO2Q7L985 606 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 GPAT4Q86UL3 456 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 RBM45Q8IUH3 476 aaKnown RBP16.76■□□□□ 0.27
SF3A1-202ENST00000411423 WDR31Q8NA23 367 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 ELOA3Q8NG57 546 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 OR52N5Q8NH56 324 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 MFSD8Q8NHS3 518 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 TAMM41Q96BW9 452 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 ZNF607Q96SK3 696 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 SF3B5Q9BWJ5 86 aaKnown RBP16.76■□□□□ 0.27
SF3A1-202ENST00000411423 TAPBPLQ9BX59 468 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 NANOGQ9H9S0 305 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 C12orf10Q9HB07 376 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 ASB6Q9NWX5 421 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 TESQ9UGI8 421 aaKnown RBP16.76■□□□□ 0.27
SF3A1-202ENST00000411423 RNF115Q9Y4L5 304 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 SLC25A15Q9Y619 301 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 ROS1P08922 2347 aa16.76■□□□□ 0.27
SF3A1-202ENST00000411423 A0A0B4J2E0 115 aa16.75■□□□□ 0.27
SF3A1-202ENST00000411423 A0A1B0GX12 115 aa16.75■□□□□ 0.27
SF3A1-202ENST00000411423 PRORSD1PA6NEY8 169 aa16.75■□□□□ 0.27
SF3A1-202ENST00000411423 CLOCKO15516 846 aa16.75■□□□□ 0.27
SF3A1-202ENST00000411423 AHSA1O95433 338 aa16.75■□□□□ 0.27
SF3A1-202ENST00000411423 THY1P04216 161 aa16.75■□□□□ 0.27
SF3A1-202ENST00000411423 CBLP22681 906 aa16.75■□□□□ 0.27
SF3A1-202ENST00000411423 SELENOPP49908 381 aa16.75■□□□□ 0.27
SF3A1-202ENST00000411423 RGS8P57771 180 aaPredicted RBP16.75■□□□□ 0.27
SF3A1-202ENST00000411423 NRF1Q16656 503 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms