RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 FBXL2Q9UKC9 423 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 PCDHAC2Q9Y5I4 1007 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 KDM4FA0A1W2PPD8 638 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 PDHXO00330 501 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 MPIG6BO95866 241 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 PLGLB1Q02325 96 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 LGALS14Q8TCE9 139 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 FGFBP2Q9BYJ0 223 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 FBRSL1Q9HCM7 1045 aaKnown RBP12.06□□□□□ -0.48
COL6A3-206ENST00000409809 VSX1Q9NZR4 365 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-206ENST00000409809 MYOTQ9UBF9 498 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 TRAPPC4Q9Y296 219 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 SGK494L7N484 410 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 TSPAN12O95859 305 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 DGKZQ13574 1117 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 TRAPPC6BQ86SZ2 158 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 ASPGQ86U10 573 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 LHFPL5Q8TAF8 219 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 MAP6Q96JE9 813 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 TMEM59Q9BXS4 323 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 YARS2Q9Y2Z4 477 aaKnown RBP12.06□□□□□ -0.48
COL6A3-206ENST00000409809 TRPM6Q9BX84 2022 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 CATSPEREQ5SY80 951 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 ACOXLQ9NUZ1 547 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 ENPP3O14638 875 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 CHRM2P08172 466 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 GALP22466 123 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 TACR1P25103 407 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 P2RX1P51575 399 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 PTTG1IPP53801 180 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 DLK1P80370 383 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 DACT2Q5SW24 774 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 EEF1DP3Q658K8 133 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 C18orf63Q68DL7 685 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 WDR73Q6P4I2 378 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 FCF1Q9Y324 198 aaKnown RBP12.06□□□□□ -0.48
COL6A3-206ENST00000409809 KLRK1P26718 216 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 GABRA3P34903 492 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 FXYD4P59646 89 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 SFRP5Q5T4F7 317 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 OVCH1Q7RTY7 1134 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 SAMD7Q7Z3H4 446 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 MFSD9Q8NBP5 474 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 CMBLQ96DG6 245 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 SLC6A20Q9NP91 592 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 A6NDN8 102 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 SERPINA2P20848 420 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 PSMB6P28072 239 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 OR2B8PP59922 312 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 TSPAN31Q12999 210 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 OR14C36Q8NHC7 312 aa12.06□□□□□ -0.48
COL6A3-206ENST00000409809 APOBEC3GQ9HC16 384 aaKnown RBP12.06□□□□□ -0.48
COL6A3-206ENST00000409809 H3BQ06 376 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-206ENST00000409809 RPLP1P05386 114 aaKnown RBP12.05□□□□□ -0.48
COL6A3-206ENST00000409809 GM2AP17900 193 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 KCNJ3P48549 501 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 AGTR2P50052 363 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 EPHA5P54756 1037 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 CLINT1Q14677 625 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 SLC35D3Q5M8T2 416 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 TMEM102Q8N9M5 508 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-206ENST00000409809 BOLLQ8N9W6 283 aaKnown RBP12.05□□□□□ -0.48
COL6A3-206ENST00000409809 OR9Q2Q8NGE9 314 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 FZD8Q9H461 694 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 GPR52Q9Y2T5 361 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 MRC1P22897 1456 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 PNRC1Q12796 327 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-206ENST00000409809 CEBPEQ15744 281 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 FBXL22Q6P050 247 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 MEX3BQ6ZN04 569 aaKnown RBP12.05□□□□□ -0.48
COL6A3-206ENST00000409809 RELL2Q8NC24 303 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-206ENST00000409809 DDOQ99489 341 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 A0A087X0M5 115 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 A0A1B0GX30 115 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 CLCNKAP51800 687 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 LGI3Q8N145 548 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 SFT2D1Q8WV19 159 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 LAMP3Q9UQV4 416 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 HS3ST4Q9Y661 456 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 RGPD8O14715 1765 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-206ENST00000409809 AP4M1O00189 453 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 DDAH2O95865 285 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 CTXN2P0C2S0 81 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 EMP2P54851 167 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 MPPED2Q15777 294 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 GGTA1PQ4G0N0 100 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 LCN10Q6JVE6 187 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 SLC22A24Q8N4F4 322 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 GPR20Q99678 358 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 SUSD2Q9UGT4 822 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 SERTAD3Q9UJW9 196 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 NME1P15531 152 aaKnown RBP12.05□□□□□ -0.48
COL6A3-206ENST00000409809 G0S2P27469 103 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 CTSL3PQ5NE16 218 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 ZNF321PQ8N8H1 164 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 HERVK_113Q902F9 699 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 ST6GALNAC5Q9BVH7 336 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 EGLN3Q9H6Z9 239 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 HES2Q9Y543 173 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 TEX50A0A1B0GTY4 177 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms