RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 PHYHO14832 338 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 AKR7A3O95154 331 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 ATE1O95260 518 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 ECDO95905 644 aaPredicted RBP8.34□□□□□ -1.08
LIG4-202ENST00000405925 CDK1P06493 297 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 DRD5P21918 477 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 CSF2RBP32927 897 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 FAUP35544 74 aaKnown RBP8.34□□□□□ -1.08
LIG4-202ENST00000405925 TMBIM6P55061 237 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 SCN1BQ07699 218 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 CEP78Q5JTW2 689 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 STPG1Q5TH74 334 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 OR2G6Q5TZ20 316 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 AGAP7PQ5VUJ5 663 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 ZNF322Q6U7Q0 402 aaPredicted RBP8.34□□□□□ -1.08
LIG4-202ENST00000405925 ANKRD37Q7Z713 158 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 TMEM179BQ7Z7N9 219 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 TMPRSS12Q86WS5 348 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 SPRYD4Q8WW59 207 aaPredicted RBP8.34□□□□□ -1.08
LIG4-202ENST00000405925 GGHQ92820 318 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 ANKRD9Q96BM1 317 aaPredicted RBP8.34□□□□□ -1.08
LIG4-202ENST00000405925 RASD2Q96D21 266 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 SLC41A2Q96JW4 573 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 AGAP4Q96P64 663 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 LAT2Q9GZY6 243 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 VNN3Q9NY84 501 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 FBXL4Q9UKA2 621 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 PCDHGA6Q9Y5G7 932 aa8.34□□□□□ -1.08
LIG4-202ENST00000405925 ZFC3H1O60293 1989 aaKnown RBP8.33□□□□□ -1.08
LIG4-202ENST00000405925 VSTM5A8MXK1 200 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 SOCS6O14544 535 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 DNAJB6O75190 326 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 OR7A10O76100 309 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 PLATP00750 562 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 FCER2P06734 321 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 CDK4P11802 303 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 PSMD7P51665 324 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 CARD18P57730 90 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 C21orf58P58505 322 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 SQSTM1Q13501 440 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 E2F2Q14209 437 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 MPEG1Q2M385 716 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 OR7E24Q6IFN5 339 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 SLC35D2Q76EJ3 337 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 NDUFAF7Q7L592 441 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 LACC1Q8IV20 430 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 ENTHD1Q8IYW4 607 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 TTC9Q92623 222 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 ALG12Q9BV10 488 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 CNOT2Q9NZN8 540 aaKnown RBP8.33□□□□□ -1.08
LIG4-202ENST00000405925 EMC3Q9P0I2 261 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 POU2F3Q9UKI9 436 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 NOTCH4Q99466 2003 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 HRKO00198 91 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 SLC16A6O15403 523 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 LCATP04180 440 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 TPOP07202 933 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 SELENOVP59797 346 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 EMX1Q04741 257 aaPredicted RBP8.33□□□□□ -1.08
LIG4-202ENST00000405925 PUDPQ08623 228 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 ZNF829Q3KNS6 432 aaPredicted RBP8.33□□□□□ -1.08
LIG4-202ENST00000405925 SLX4IPQ5VYV7 408 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 HBMQ6B0K9 141 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 NIPAL3Q6P499 406 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 VASH2Q86V25 355 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 SNX29P2Q8IUI4 249 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 ZNF511Q8NB15 262 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 OR2Y1Q8NGV0 311 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 SLC25A43Q8WUT9 341 aaPredicted RBP8.33□□□□□ -1.08
LIG4-202ENST00000405925 ZNF566Q969W8 418 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 DUS3LQ96G46 650 aaKnown RBP8.33□□□□□ -1.08
LIG4-202ENST00000405925 RADILQ96JH8 1075 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 EMC6Q9BV81 110 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 ENKD1Q9H0I2 346 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 FN3KQ9H479 309 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 CHMP1AQ9HD42 196 aaPredicted RBP8.33□□□□□ -1.08
LIG4-202ENST00000405925 NYNRINQ9P2P1 1898 aaKnown RBP8.33□□□□□ -1.08
LIG4-202ENST00000405925 K7ESF4 209 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 ZNF208O43345 1280 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 APOC1P02654 83 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 SIRPAP78324 504 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 FOXK1P85037 733 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 TGFBR3Q03167 851 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 EBPQ15125 230 aaKnown RBP8.33□□□□□ -1.08
LIG4-202ENST00000405925 PLCZ1Q86YW0 608 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 TEX19Q8NA77 164 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 GPR32P1Q8NGA4 272 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 OR10G3Q8NGC4 313 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 ZNF501Q96CX3 271 aaPredicted RBP8.33□□□□□ -1.08
LIG4-202ENST00000405925 TMEM41AQ96HV5 264 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 C4orf36Q96KX1 117 aa8.33□□□□□ -1.08
LIG4-202ENST00000405925 GPR55Q9Y2T6 319 aaPredicted RBP8.33□□□□□ -1.08
LIG4-202ENST00000405925 KLF13Q9Y2Y9 288 aaPredicted RBP8.33□□□□□ -1.08
LIG4-202ENST00000405925 TMEM72A0PK05 275 aa8.32□□□□□ -1.08
LIG4-202ENST00000405925 LNP1A1A4G5 178 aa8.32□□□□□ -1.08
LIG4-202ENST00000405925 PRKYO43930 277 aa8.32□□□□□ -1.08
LIG4-202ENST00000405925 APOBEC1P41238 236 aaKnown RBP8.32□□□□□ -1.08
LIG4-202ENST00000405925 RBM34P42696 430 aaKnown RBP8.32□□□□□ -1.08
LIG4-202ENST00000405925 TSPAN5P62079 268 aa8.32□□□□□ -1.08
LIG4-202ENST00000405925 SF3B4Q15427 424 aaKnown RBP eCLIP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms