RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SLC25A12O75746 678 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 UPK1BO75841 260 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 MAKP20794 623 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 TACR3P29371 465 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 SLC6A6P31641 620 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 COL28A1Q2UY09 1125 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 PGGHGQ32M88 737 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 DESI1Q6ICB0 168 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 SLC30A6Q6NXT4 461 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 LYPD8Q6UX82 237 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 PLEKHG7Q6ZR37 379 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 RTL4Q6ZR62 310 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 TMEM156Q8N614 296 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 IQCF1Q8N6M8 205 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 IL22RA1Q8N6P7 574 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 ITPKCQ96DU7 683 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 OR52D1Q9H346 318 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 CPNE5Q9HCH3 593 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 C20orf141Q9NUB4 165 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 WDR70Q9NW82 654 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 TAS2R16Q9NYV7 291 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 SSR3Q9UNL2 185 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 ZNF337Q9Y3M9 751 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 CDC42EP2O14613 210 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 ADRA2AP08913 450 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 CPEP16870 476 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 SOX3P41225 446 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 MAP2K6P52564 334 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 MLF1P58340 268 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 CDC20Q12834 499 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 QPRTQ15274 297 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 ZNF791Q3KP31 576 aaPredicted RBP16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 IGF2-ASQ6U949 168 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 BTLAQ7Z6A9 289 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 GPALPP1Q8IXQ4 340 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 GPR119Q8TDV5 335 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 PLA2G12AQ9BZM1 189 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 C6orf62Q9GZU0 229 aaPredicted RBP16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 CDCP1Q9H5V8 836 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 ATP13A2Q9NQ11 1180 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 TEKT2Q9UIF3 430 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 WIF1Q9Y5W5 379 aa16.56■□□□□ 0.24
CCDC88C-203ENST00000389856 HEATR5AQ86XA9 2040 aa16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 IGLV3-32A0A0A0MS00 114 aa16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 TERTO14746 1132 aaKnown RBP16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 GPX5O75715 221 aa16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 OR7A10O76100 309 aa16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 NTN1O95631 604 aa16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 TGFBR1P36897 503 aa16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 NOVA1P51513 510 aaKnown RBP16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 WNT4P56705 351 aa16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 CLEC12AQ5QGZ9 265 aa16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 MEX3DQ86XN8 651 aaKnown RBP16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 ANKK1Q8NFD2 765 aa16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 OR10G3Q8NGC4 313 aa16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 ADAMTS14Q8WXS8 1223 aa16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 SGCZQ96LD1 299 aa16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 SAMD8Q96LT4 415 aa16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 NUAK2Q9H093 628 aa16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 SIGLEC7Q9Y286 467 aa16.55■□□□□ 0.24
CCDC88C-203ENST00000389856 ZNF670-ZNF695F2Z2N8 137 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 GNB5O14775 395 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 ZNF354AO60765 605 aaPredicted RBP16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 NDUFB2O95178 105 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 MTNR1AP48039 350 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 ZNF41P51814 821 aaPredicted RBP16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 GAS1P54826 345 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 PRPS1P60891 318 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 SPANXN2Q5MJ10 180 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 C10orf53Q8N6V4 93 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 OR8D4Q8NGM9 314 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 OR13C2Q8NGS9 318 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 RNFT2Q96EX2 444 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 COQ7Q99807 217 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 IFT27Q9BW83 186 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 JAM3Q9BX67 310 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 RTN4RQ9BZR6 473 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 PTGES2Q9H7Z7 377 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 HPF1Q9NWY4 346 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 ABI3Q9P2A4 366 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 WDFY4Q6ZS81 3184 aa16.54■□□□□ 0.24
CCDC88C-203ENST00000389856 IFNGP01579 166 aa16.53■□□□□ 0.24
CCDC88C-203ENST00000389856 HIST1H2ABP04908 130 aa16.53■□□□□ 0.24
CCDC88C-203ENST00000389856 FUT1P19526 365 aa16.53■□□□□ 0.24
CCDC88C-203ENST00000389856 CRYBB2P43320 205 aa16.53■□□□□ 0.24
CCDC88C-203ENST00000389856 TPBGQ13641 420 aa16.53■□□□□ 0.24
CCDC88C-203ENST00000389856 ARMC4Q5T2S8 1044 aa16.53■□□□□ 0.24
CCDC88C-203ENST00000389856 HIST3H2AQ7L7L0 130 aa16.53■□□□□ 0.24
CCDC88C-203ENST00000389856 LIPHQ8WWY8 451 aa16.53■□□□□ 0.24
CCDC88C-203ENST00000389856 HIST1H2ACQ93077 130 aa16.53■□□□□ 0.24
CCDC88C-203ENST00000389856 FER1L6-AS2Q96M78 137 aa16.53■□□□□ 0.24
CCDC88C-203ENST00000389856 CCDC32Q9BV29 185 aa16.53■□□□□ 0.24
CCDC88C-203ENST00000389856 ASPNQ9BXN1 380 aa16.53■□□□□ 0.24
CCDC88C-203ENST00000389856 UBQLN3Q9H347 655 aa16.53■□□□□ 0.24
CCDC88C-203ENST00000389856 FN3KQ9H479 309 aa16.53■□□□□ 0.24
CCDC88C-203ENST00000389856 CLEC2DQ9UHP7 191 aa16.53■□□□□ 0.24
CCDC88C-203ENST00000389856 TRAV36DV7A0A075B6V5 113 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 LOC101059948A0A1B0GTJ6 334 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 CDRT15L2A8MXV6 281 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 PTP4A3O75365 173 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms