RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 CTDSPLO15194 276 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 IFNGR1P15260 489 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 RAB28P51157 221 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 DHCR24Q15392 516 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 ZNF765Q7L2R6 523 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 THEM6Q8WUY1 208 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 ZNRF4Q8WWF5 429 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 OTUB2Q96DC9 234 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 LRRC3BQ96PB8 259 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 ING1Q9UK53 422 aaPredicted RBP12.61□□□□□ -0.39
USP49-201ENST00000373006 MED31Q9Y3C7 131 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 GABARAPH6UMI1 98 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 GALR3O60755 368 aaPredicted RBP12.6□□□□□ -0.39
USP49-201ENST00000373006 SPDEFO95238 335 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 S100A11P31949 105 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 ADH7P40394 386 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 SEC61A1P61619 476 aaKnown RBP12.6□□□□□ -0.39
USP49-201ENST00000373006 TMEM69Q5SWH9 247 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 LILRA6Q6PI73 481 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 FAM71CQ8NEG0 241 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 SYNPRQ8TBG9 265 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 ZNF707Q96C28 371 aaPredicted RBP12.6□□□□□ -0.39
USP49-201ENST00000373006 NPAS1Q99742 590 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 ADAT1Q9BUB4 502 aaKnown RBP12.6□□□□□ -0.39
USP49-201ENST00000373006 PITHD1Q9GZP4 211 aaPredicted RBP12.6□□□□□ -0.39
USP49-201ENST00000373006 ZCCHC4Q9H5U6 513 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 IL21RQ9HBE5 538 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 GPR160Q9UJ42 338 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 SPEGQ15772 3267 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 IFITM5A6NNB3 132 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 NDUFS6O75380 124 aaKnown RBP12.6□□□□□ -0.39
USP49-201ENST00000373006 RHOP08100 348 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 GIPP09681 153 aaPredicted RBP12.6□□□□□ -0.39
USP49-201ENST00000373006 CISD3P0C7P0 127 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 LAG3P18627 525 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 STX4Q12846 297 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 ETFDHQ16134 617 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 TMUB2Q71RG4 321 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 MTSS1LQ765P7 747 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 ERN2Q76MJ5 926 aaKnown RBP12.6□□□□□ -0.39
USP49-201ENST00000373006 OR6V1Q8N148 313 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 RAB42Q8N4Z0 105 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 NANPQ8TBE9 248 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 OR8D1Q8WZ84 308 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 COX14Q96I36 57 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 PTCHD1Q96NR3 888 aa12.6□□□□□ -0.39
USP49-201ENST00000373006 ALPK2Q86TB3 2170 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 OR6C74A6NCV1 312 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 FAM171A2A8MVW0 826 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 A8MXK9 166 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 LINC00587B1AMM8 73 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 PYCARD-AS1I3L0S3 204 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 OGG1O15527 345 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 RP2O75695 350 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 PCDH8O95206 1070 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 ECDO95905 644 aaPredicted RBP12.59□□□□□ -0.39
USP49-201ENST00000373006 TMIGD3P0DMS9 266 aaPredicted RBP12.59□□□□□ -0.39
USP49-201ENST00000373006 CSF2RAP15509 400 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 PTH2RP49190 550 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 H2BFSP57053 126 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 RAP2BP61225 183 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 ZNF169Q14929 603 aaPredicted RBP12.59□□□□□ -0.39
USP49-201ENST00000373006 ZNF77Q15935 545 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 BAIAP2L2Q6UXY1 529 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 OVCH1Q7RTY7 1134 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 SAMD14Q8IZD0 417 aaPredicted RBP12.59□□□□□ -0.39
USP49-201ENST00000373006 HDDC3Q8N4P3 179 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 ZNF454Q8N9F8 522 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 MS4A4EQ96PG1 132 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 EMC3Q9P0I2 261 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 TBC1D3EA0A087X179 549 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 KRBOX1C9JBD0 128 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 LYPD3O95274 346 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 CXCL10P02778 98 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 RLN1P04808 185 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 HIST1H1CP16403 213 aaKnown RBP12.59□□□□□ -0.39
USP49-201ENST00000373006 CDK2P24941 298 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 P2RX1P51575 399 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 EPHA4P54764 986 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 ACTC1P68032 377 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 ACTA1P68133 377 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 DUSP8Q13202 625 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 ARHGAP11BQ3KRB8 267 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 AMZ1Q400G9 498 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 TFAP2EQ6VUC0 442 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 PAQR7Q86WK9 346 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 NRROSQ86YC3 692 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 TMEFF1Q8IYR6 380 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 LRRC25Q8N386 305 aaPredicted RBP12.59□□□□□ -0.39
USP49-201ENST00000373006 SPICQ8N5J4 248 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 MBNL1Q9NR56 388 aaKnown RBP12.59□□□□□ -0.39
USP49-201ENST00000373006 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.59□□□□□ -0.39
USP49-201ENST00000373006 C2orf42Q9NWW7 574 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 TAS2R5Q9NYW4 299 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 SZT2Q5T011 3432 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 TRPM6Q9BX84 2022 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 OR2M5A3KFT3 312 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 TUBAL3A6NHL2 446 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 SELENOFO60613 162 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 DPP4P27487 766 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms