RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 KCNMB2Q9Y691 235 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 AKAP13Q12802 2813 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 NPIPB13A6NJU9 1138 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 KDM4EB2RXH2 506 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 NPIPB4C9JG80 1138 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 LRRN3E7EW58 273 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 LINC01387J3KSC0 135 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 IMPA2O14732 288 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 KLK10O43240 276 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 GLSO94925 669 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 TXNDC12O95881 172 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 SP1P08047 785 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 PIPP12273 146 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 HK1P19367 917 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 SPINK2P20155 84 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 IDUAP35475 653 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 SLC15A1P46059 708 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 ST13P50502 369 aaKnown RBP13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 B3GALT5-AS1P59052 145 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 SNAPC1Q16533 368 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 CLEC12AQ5QGZ9 265 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 AADACL4Q5VUY2 407 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 C1QL3Q5VWW1 255 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 SPINK14Q6IE38 97 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 SLC25A25Q6KCM7 469 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 TMEM154Q6P9G4 183 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 NANOGNBQ7Z5D8 188 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 TCEANCQ8N8B7 351 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 OR5J2Q8NH18 312 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 OR11A1Q9GZK7 315 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 ZNF703Q9H7S9 590 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 CLN6Q9NWW5 311 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 QPCTLQ9NXS2 382 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 SCN3BQ9NY72 215 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 CNOT2Q9NZN8 540 aaKnown RBP13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 PSORS1C1Q9UIG5 152 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 DKKL1Q9UK85 242 aa13.46□□□□□ -0.25
CCDC88C-202ENST00000334448 OR2M5A3KFT3 312 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 LIPT2A6NK58 231 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 G3V3Y1 287 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 M0R3G1 203 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 CD14P08571 375 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 CD46P15529 392 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 IL11P20809 199 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 FMO3P31513 532 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 RPS5P46782 204 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 TNFSF10P50591 281 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 FOXK2Q01167 660 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 ZP4Q12836 540 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 SMN1Q16637 294 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 EMC4Q5J8M3 183 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 ZNF362Q5T0B9 420 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 POMZP3Q6PJE2 187 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 FAM122BQ7Z309 247 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 ZFP62Q8NB50 900 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 FDCSPQ8NFU4 85 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 SMAD5Q99717 465 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 PIGQQ9BRB3 760 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 IFT27Q9BW83 186 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 MFRPQ9BY79 579 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 ADNPQ9H2P0 1102 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 MRPS18AQ9NVS2 196 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 PAK1IP1Q9NWT1 392 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 ALKBH4Q9NXW9 302 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 B4GALT7Q9UBV7 327 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 TRAPPC4Q9Y296 219 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 PCDHGB1Q9Y5G3 927 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 FREM2Q5SZK8 3169 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 SPTBN2O15020 2390 aa13.45□□□□□ -0.26
CCDC88C-202ENST00000334448 PINLYPA6NC86 204 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 EFCAB10A6NFE3 127 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 CLCA1A8K7I4 914 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 MCIDASD6RGH6 385 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 M0R129 80 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 PRODHO43272 600 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 DNPH1O43598 174 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 TLX2O43763 284 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 XPNPEP2O43895 674 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 ENTPD6O75354 484 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 IGHMP01871 453 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 HIST1H2ABP04908 130 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 HPNP05981 417 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 HTR1AP08908 422 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 IMPDH2P12268 514 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 CCNA2P20248 432 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 GRPRP30550 384 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 RAC1P63000 192 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 RPL18Q07020 188 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 TMED1Q13445 227 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 DEFB109BQ30KR1 87 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 ALG10Q5BKT4 473 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 SLC6A19Q695T7 634 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 GPR139Q6DWJ6 353 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 IGFL3Q6UXB1 125 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 HIST3H2AQ7L7L0 130 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 LSRQ86X29 649 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 SULF2Q8IWU5 870 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 C10orf53Q8N6V4 93 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 TMEM178AQ8NBL3 297 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 BPIFB6Q8NFQ5 453 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms