RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 ZNF281Q9Y2X9 895 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 A0A0G2JLL6 359 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 PQLC2LA1A4F0 135 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 NEDD8-MDP1E9PL57 170 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF195O14628 629 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 CRXO43186 299 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 SUSD5O60279 629 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 SCGB1D1O95968 90 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 CELP19835 753 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 IKZF1Q13422 519 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 DEGS2Q6QHC5 323 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 PRRT2Q7Z6L0 340 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 NRMQ8IXM6 262 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 CASTOR1Q8WTX7 329 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 SDSLQ96GA7 329 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 CDK5RAP2Q96SN8 1893 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 STACQ99469 402 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 KCNJ15Q99712 375 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 GNG8Q9UK08 70 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 DHDHQ9UQ10 334 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 KMT2EQ8IZD2 1858 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 DUXBA0A1W2PPF3 345 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 M0QZ24 198 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 GP1BAP07359 652 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 IL3RAP26951 378 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 EMP3P54852 163 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 SMAD3P84022 425 aaKnown RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 MXD1Q05195 221 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 FAM74A3Q4VXF1 159 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 RTP2Q5QGT7 225 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 TMEM225Q6GV28 225 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 SGPP2Q8IWX5 399 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 OR4N5Q8IXE1 308 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF680Q8NEM1 530 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 GIMAP1Q8WWP7 306 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 MYLIPQ8WY64 445 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 GTPBP3Q969Y2 492 aaKnown RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 EXOSC8Q96B26 276 aaKnown RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 GPR174Q9BXC1 333 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF395Q9H8N7 513 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 CREBZFQ9NS37 354 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 YIPF1Q9Y548 306 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 PCDHGA9Q9Y5G4 932 aaKnown RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 PKDREJQ9NTG1 2253 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 FREM3P0C091 2139 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 A0A0U1RQF3 1178 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 MPTX1A8MV57 137 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 PTBP3O95758 552 aaKnown RBP4.9□□□□□ -1.62
SCN1A-201ENST00000303395 TNFP01375 233 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 CRYABP02511 175 aaKnown RBP4.9□□□□□ -1.62
SCN1A-201ENST00000303395 DUSP3P51452 185 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-201ENST00000303395 SLAMF1Q13291 335 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 RTL8BQ17RB0 113 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 C14orf28Q4W4Y0 310 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 TMPRSS9Q7Z410 1059 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 NPAS4Q8IUM7 802 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 C1orf87Q8N0U7 546 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 LRRC25Q8N386 305 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-201ENST00000303395 PCED1BQ96HM7 432 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 C11orf84Q9BUA3 381 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-201ENST00000303395 SRRQ9GZT4 340 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 ZCCHC4Q9H5U6 513 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF629Q9UEG4 869 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-201ENST00000303395 U3KQV3 271 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 MBLAC1A4D2B0 266 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-201ENST00000303395 hCG_2039718K7EN88 272 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 TCRBP04435 133 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 GJB1P08034 283 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 OR8U9P0C7N5 309 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF728P0DKX0 622 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 EVX1P49640 407 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 RAB28P51157 221 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 PLA2G7Q13093 441 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 CEACAM19Q7Z692 300 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 KIAA0319LQ8IZA0 1049 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 LMNTD1Q8N9Z9 388 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 TSPAN10Q9H1Z9 355 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF442Q9H7R0 627 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 IGLV3-10A0A075B6K4 115 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF705GA8MUZ8 300 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-201ENST00000303395 OR1F1O43749 312 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 BDKRB1P46663 353 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 KIR2DS3Q14952 304 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 PDLIM3Q53GG5 364 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-201ENST00000303395 ENTPD8Q5MY95 495 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 MEPCEQ7L2J0 689 aaKnown RBP4.9□□□□□ -1.62
SCN1A-201ENST00000303395 RBMXL3Q8N7X1 1067 aaKnown RBP4.9□□□□□ -1.62
SCN1A-201ENST00000303395 TSTD1Q8NFU3 115 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 OR4K1Q8NGD4 311 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 OR6F1Q8NGZ6 308 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 OR6S1Q8NH40 331 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF516Q92618 1163 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 ORAI1Q96D31 301 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 CRLF2Q9HC73 371 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 SPHK1Q9NYA1 384 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 OR6C2Q9NZP2 312 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 IL17CQ9P0M4 197 aa4.9□□□□□ -1.62
SCN1A-201ENST00000303395 HRO43593 1189 aa4.9□□□□□ -1.63
SCN1A-201ENST00000303395 RAB3DO95716 219 aa4.9□□□□□ -1.63
SCN1A-201ENST00000303395 HBQ1P09105 142 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms