RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 PAQR6Q6TCH4 344 aa12.98□□□□□ -0.33
C9orf3-202ENST00000297979 NUP54Q7Z3B4 507 aa12.98□□□□□ -0.33
C9orf3-202ENST00000297979 DTX3Q8N9I9 347 aa12.98□□□□□ -0.33
C9orf3-202ENST00000297979 ELP5Q8TE02 316 aa12.98□□□□□ -0.33
C9orf3-202ENST00000297979 DUSP19Q8WTR2 217 aa12.98□□□□□ -0.33
C9orf3-202ENST00000297979 TTC9Q92623 222 aa12.98□□□□□ -0.33
C9orf3-202ENST00000297979 RPL3LQ92901 407 aaKnown RBP12.98□□□□□ -0.33
C9orf3-202ENST00000297979 TIMMDC1Q9NPL8 285 aa12.98□□□□□ -0.33
C9orf3-202ENST00000297979 OSGIN1Q9UJX0 560 aa12.98□□□□□ -0.33
C9orf3-202ENST00000297979 EXOSC1Q9Y3B2 195 aaKnown RBP12.98□□□□□ -0.33
C9orf3-202ENST00000297979 HS3ST3B1Q9Y662 390 aa12.98□□□□□ -0.33
C9orf3-202ENST00000297979 PRR23D1E9PI22 279 aaPredicted RBP12.97□□□□□ -0.33
C9orf3-202ENST00000297979 AIREO43918 545 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 OR2J2O76002 312 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 IFNGP01579 166 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 PRR23D2P0DMB1 279 aaPredicted RBP12.97□□□□□ -0.33
C9orf3-202ENST00000297979 COX6A1P12074 109 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 GADD45AP24522 165 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 CXCR1P25024 350 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 ETV1P50549 477 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 LIMK1P53667 647 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 VBP1P61758 197 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 FOXK1P85037 733 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 DOC2BQ14184 412 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 QPRTQ15274 297 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 MOGQ16653 247 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 TSTQ16762 297 aaKnown RBP12.97□□□□□ -0.33
C9orf3-202ENST00000297979 CDCP2Q5VXM1 449 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 FCRLBQ6BAA4 426 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 SHFQ7M4L6 423 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 C10orf53Q8N6V4 93 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 LIPHQ8WWY8 451 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 LIN37Q96GY3 246 aaPredicted RBP12.97□□□□□ -0.33
C9orf3-202ENST00000297979 OPALINQ96PE5 141 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 ERMAPQ96PL5 475 aaPredicted RBP12.97□□□□□ -0.33
C9orf3-202ENST00000297979 TAAR9Q96RI9 348 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 AIFM2Q9BRQ8 373 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 MED20Q9H944 212 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 MMP25Q9NPA2 562 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 PISDQ9UG56 409 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 CHRNA9Q9UGM1 479 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 MCIDASD6RGH6 385 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 M0R3G1 203 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 CCRL2O00421 344 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 CD63P08962 238 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 JMJD7P0C870 316 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 CLDN6P56747 220 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 PRPS1P60891 318 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 NCS1P62166 190 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 SPEM2Q0P670 501 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 EXT1Q16394 746 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 COL28A1Q2UY09 1125 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 LYPD8Q6UX82 237 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 DPY19L2P2Q6ZN68 376 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 SUMF1Q8NBK3 374 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 NDNFQ8TB73 568 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 GPR119Q8TDV5 335 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 RNF138Q8WVD3 245 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 DDA1Q9BW61 102 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 NANSQ9NR45 359 aa12.97□□□□□ -0.33
C9orf3-202ENST00000297979 EXOGQ9Y2C4 368 aaKnown RBP12.97□□□□□ -0.33
C9orf3-202ENST00000297979 SCG5P05408 212 aa12.96□□□□□ -0.33
C9orf3-202ENST00000297979 RPL4P36578 427 aaKnown RBP12.96□□□□□ -0.33
C9orf3-202ENST00000297979 C17orf67Q0P5P2 114 aa12.96□□□□□ -0.33
C9orf3-202ENST00000297979 ITGADQ13349 1161 aa12.96□□□□□ -0.33
C9orf3-202ENST00000297979 CRMP1Q14194 572 aa12.96□□□□□ -0.33
C9orf3-202ENST00000297979 MEPCEQ7L2J0 689 aaKnown RBP12.96□□□□□ -0.33
C9orf3-202ENST00000297979 IGFN1Q86VF2 1251 aa12.96□□□□□ -0.33
C9orf3-202ENST00000297979 ZNF565Q8N9K5 539 aa12.96□□□□□ -0.33
C9orf3-202ENST00000297979 HCAR1Q9BXC0 346 aa12.96□□□□□ -0.33
C9orf3-202ENST00000297979 NEK6Q9HC98 313 aa12.96□□□□□ -0.33
C9orf3-202ENST00000297979 TAS2R10Q9NYW0 307 aa12.96□□□□□ -0.33
C9orf3-202ENST00000297979 MALT1Q9UDY8 824 aa12.96□□□□□ -0.33
C9orf3-202ENST00000297979 PADI1Q9ULC6 663 aa12.96□□□□□ -0.33
C9orf3-202ENST00000297979 TMEM129A0AVI4 362 aa12.96□□□□□ -0.34
C9orf3-202ENST00000297979 PMS2P1A4D2B8 440 aa12.96□□□□□ -0.34
C9orf3-202ENST00000297979 FBXO45P0C2W1 286 aa12.96□□□□□ -0.34
C9orf3-202ENST00000297979 PAICSP22234 425 aaKnown RBP12.96□□□□□ -0.34
C9orf3-202ENST00000297979 POLR2HP52434 150 aaKnown RBP12.96□□□□□ -0.34
C9orf3-202ENST00000297979 GXYLT1Q4G148 440 aa12.96□□□□□ -0.34
C9orf3-202ENST00000297979 C6orf15Q6UXA7 325 aaPredicted RBP12.96□□□□□ -0.34
C9orf3-202ENST00000297979 SLC37A3Q8NCC5 494 aa12.96□□□□□ -0.34
C9orf3-202ENST00000297979 OR4F15Q8NGB8 312 aa12.96□□□□□ -0.34
C9orf3-202ENST00000297979 KTI12Q96EK9 354 aaPredicted RBP12.96□□□□□ -0.34
C9orf3-202ENST00000297979 IMMP1LQ96LU5 166 aa12.96□□□□□ -0.34
C9orf3-202ENST00000297979 GPX7Q96SL4 187 aaPredicted RBP12.96□□□□□ -0.34
C9orf3-202ENST00000297979 IER3IP1Q9Y5U9 82 aa12.96□□□□□ -0.34
C9orf3-202ENST00000297979 WDR87Q6ZQQ6 2873 aa12.96□□□□□ -0.34
C9orf3-202ENST00000297979 MPDZO75970 2070 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 SLC22A31A6NKX4 558 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 PLD2O14939 933 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 IGHEP01854 428 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 ATP6V1E1P36543 226 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 SUMO3P55854 103 aaPredicted RBP12.95□□□□□ -0.34
C9orf3-202ENST00000297979 MLLT11Q13015 90 aaPredicted RBP12.95□□□□□ -0.34
C9orf3-202ENST00000297979 KLHL12Q53G59 568 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 GRINAQ7Z429 371 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 SLC15A4Q8N697 577 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 PTP4A1Q93096 173 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 MED30Q96HR3 178 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms