RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 NSD1Q96L73 2696 aaPredicted RBP8.56□□□□□ -1.04
VPS41-201ENST00000265745 A0A1W2PP18 115 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 LIPT2A6NK58 231 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 ABCD4O14678 606 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 ANP32DO95626 131 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 GKN3PP0CG01 181 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 PRG2P13727 222 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 CXCR1P25024 350 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 IDUAP35475 653 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 CDKN1AP38936 164 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 POLR2JP52435 117 aaKnown RBP8.55□□□□□ -1.04
VPS41-201ENST00000265745 CRISP3P54108 245 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 FOXG1P55316 489 aaPredicted RBP8.55□□□□□ -1.04
VPS41-201ENST00000265745 DSTNP60981 165 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 FAPQ12884 760 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 CEACAM7Q14002 265 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 GABRA6Q16445 453 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 CLEC12BQ2HXU8 276 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 GTDC1Q4AE62 458 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 LIN52Q52LA3 116 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 OR7E24Q6IFN5 339 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 PAQR6Q6TCH4 344 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 EPGNQ6UW88 154 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 ZNF836Q6ZNA1 936 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 DTX2Q86UW9 622 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 TMEM99Q8N816 258 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 ZIC4Q8N9L1 334 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 WDR31Q8NA23 367 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 OR52E4Q8NGH9 312 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 OR9I1Q8NGQ6 314 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 OR52N5Q8NH56 324 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 OR52P1PQ8NH57 321 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 GTF2H4Q92759 462 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 GTPBP3Q969Y2 492 aaKnown RBP8.55□□□□□ -1.04
VPS41-201ENST00000265745 AURKBQ96GD4 344 aaPredicted RBP8.55□□□□□ -1.04
VPS41-201ENST00000265745 TRAF4Q9BUZ4 470 aaPredicted RBP8.55□□□□□ -1.04
VPS41-201ENST00000265745 SLC7A10Q9NS82 523 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 THUMPD1Q9NXG2 353 aaKnown RBP8.55□□□□□ -1.04
VPS41-201ENST00000265745 CALML5Q9NZT1 146 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 SLC9A8Q9Y2E8 581 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 FLVCR1Q9Y5Y0 555 aa8.55□□□□□ -1.04
VPS41-201ENST00000265745 CADP27708 2225 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 A0A0G2JPF8 293 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 A0A1W2PR80 420 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 FAM234BA2RU67 622 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 HNRNPCL2B2RXH8 293 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 HNRNPCL3B7ZW38 293 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 J3QW42 95 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 HNRNPCL1O60812 293 aaKnown RBP8.54□□□□□ -1.04
VPS41-201ENST00000265745 NDUFS7O75251 213 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 ERLIN1O75477 346 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 AKR7A3O95154 331 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 IGHV4-39P01824 125 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 BCHEP06276 602 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 GPIP06744 558 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 ITGA5P08648 1049 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 HNRNPCL4P0DMR1 293 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 PTAFRP25105 342 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 CD40P25942 277 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 PCSK6P29122 969 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 MRPL19P49406 292 aaKnown RBP8.54□□□□□ -1.04
VPS41-201ENST00000265745 COPZ1P61923 177 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 BNIP2Q12982 314 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 LARS2Q15031 903 aaKnown RBP8.54□□□□□ -1.04
VPS41-201ENST00000265745 RGNQ15493 299 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 ZSWIM7Q19AV6 140 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 C6orf10Q5SRN2 563 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 OTUD3Q5T2D3 398 aaPredicted RBP8.54□□□□□ -1.04
VPS41-201ENST00000265745 TSPO2Q5TGU0 170 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 RNF220Q5VTB9 566 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 WBP2NLQ6ICG8 309 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 KLHL17Q6TDP4 642 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 TMEM108Q6UXF1 575 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 CASP12Q6UXS9 341 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 DNM1P46Q6ZS02 220 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 MIER2Q8N344 545 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 CADM2Q8N3J6 435 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 TMEM45BQ96B21 275 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 TMEM19Q96HH6 336 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 SF3B5Q9BWJ5 86 aaKnown RBP8.54□□□□□ -1.04
VPS41-201ENST00000265745 SPATA9Q9BWV2 254 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 AMBRA1Q9C0C7 1298 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 RASSF4Q9H2L5 321 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 SLCO5A1Q9H2Y9 848 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 BCL2L10Q9HD36 194 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 FAIMQ9NVQ4 179 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 MGAT4BQ9UQ53 548 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 ZNF443Q9Y2A4 671 aaPredicted RBP8.54□□□□□ -1.04
VPS41-201ENST00000265745 PCDHB14Q9Y5E9 798 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 USH1CQ9Y6N9 552 aa8.54□□□□□ -1.04
VPS41-201ENST00000265745 DSCAMO60469 2012 aa8.53□□□□□ -1.04
VPS41-201ENST00000265745 ZANQ9Y493 2812 aa8.53□□□□□ -1.04
VPS41-201ENST00000265745 TMEM247A6NEH6 219 aa8.53□□□□□ -1.04
VPS41-201ENST00000265745 AQP7P3A6NL99 342 aa8.53□□□□□ -1.04
VPS41-201ENST00000265745 A8MVM7 634 aa8.53□□□□□ -1.04
VPS41-201ENST00000265745 INAFM1C9JVW0 142 aa8.53□□□□□ -1.04
VPS41-201ENST00000265745 E7EQL1 145 aa8.53□□□□□ -1.04
VPS41-201ENST00000265745 CLIC1O00299 241 aa8.53□□□□□ -1.04
VPS41-201ENST00000265745 NPIPB7O75200 414 aa8.53□□□□□ -1.04
VPS41-201ENST00000265745 TGDSO95455 350 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms