RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 APOOQ9BUR5 198 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 METTL17Q9H7H0 456 aaPredicted RBP9.25□□□□□ -0.93
LIG3-201ENST00000262327 POT1Q9NUX5 634 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 RCE1Q9Y256 329 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 ZNF175Q9Y473 711 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 IER3IP1Q9Y5U9 82 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 COL4A2P08572 1712 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 TRBV2A0A0J9YWF9 115 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 A0A1B0GWA3 101 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 ZNF593O00488 134 aaPredicted RBP9.24□□□□□ -0.93
LIG3-201ENST00000262327 GPR171O14626 319 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 RPP14O95059 124 aaKnown RBP9.24□□□□□ -0.93
LIG3-201ENST00000262327 MPC2O95563 127 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 EPXP11678 715 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 ZNF3P17036 446 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 EDNRAP25101 427 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 ACTR1BP42025 376 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 ACTR1AP61163 376 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 GSG1Q2KHT4 349 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 ODF4Q2M2E3 257 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 Q6ZTK2 550 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 OR2T35Q8NGX2 323 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 SNX33Q8WV41 574 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 GAL3ST3Q96A11 431 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 CDX2Q99626 313 aaPredicted RBP9.24□□□□□ -0.93
LIG3-201ENST00000262327 NKX3-1Q99801 234 aaPredicted RBP9.24□□□□□ -0.93
LIG3-201ENST00000262327 GABRG3Q99928 467 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 ZNF350Q9GZX5 532 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 LYARQ9NX58 379 aaKnown RBP9.24□□□□□ -0.93
LIG3-201ENST00000262327 B3GNT2Q9NY97 397 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 KLK11Q9UBX7 282 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 DAPP1Q9UN19 280 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 SLC35A3Q9Y2D2 325 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 SDK1Q7Z5N4 2213 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 ZNF98A6NK75 572 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 FLRT2O43155 660 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 B3GALT2O43825 422 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 GATBO75879 557 aaKnown RBP9.24□□□□□ -0.93
LIG3-201ENST00000262327 ADH1BP00325 375 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 NTSR1P30989 418 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 GDNFP39905 211 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 VEGFCP49767 419 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 TFF2Q03403 129 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 FAM53BQ14153 422 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 CEBPEQ15744 281 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 DEFB110Q30KQ9 67 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 EIPR1Q53HC9 387 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 FAM209BQ5JX69 171 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 DMKNQ6E0U4 476 aaPredicted RBP9.24□□□□□ -0.93
LIG3-201ENST00000262327 CMTM4Q8IZR5 234 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 NR4A3Q92570 626 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 GPR137Q96N19 417 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 NMNAT3Q96T66 252 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 SEC22CQ9BRL7 303 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 RAB11FIP5Q9BXF6 653 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 TMEM168Q9H0V1 697 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 HEXA-AS1Q9H8Q6 139 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 ST6GALNAC2Q9UJ37 374 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 COPS3Q9UNS2 423 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 PIAS3Q9Y6X2 628 aa9.24□□□□□ -0.93
LIG3-201ENST00000262327 C7orf66A4D0T2 115 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 MCIDASD6RGH6 385 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 HRKO00198 91 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 HCRTR1O43613 425 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 GMFGO60234 142 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 RAF1P04049 648 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 RPL4P36578 427 aaKnown RBP9.23□□□□□ -0.93
LIG3-201ENST00000262327 ZP1P60852 638 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 MRPS21P82921 87 aaKnown RBP9.23□□□□□ -0.93
LIG3-201ENST00000262327 BDH1Q02338 343 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 EXOSC2Q13868 293 aaKnown RBP9.23□□□□□ -0.93
LIG3-201ENST00000262327 GRM7Q14831 915 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 CHMP1BQ7LBR1 199 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 KANSL1Q7Z3B3 1105 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 PRSS42Q7Z5A4 293 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 PXKQ7Z7A4 578 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 OR2T4Q8NH00 348 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 OR1E3Q8WZA6 343 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 TSSK2Q96PF2 358 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 TIMM29Q9BSF4 260 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 TMEM27Q9HBJ8 222 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 NOX4Q9NPH5 578 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 SLC2A4RGQ9NR83 387 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 ZNF224Q9NZL3 707 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 ELF5Q9UKW6 265 aaPredicted RBP9.23□□□□□ -0.93
LIG3-201ENST00000262327 SCML1Q9UN30 329 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 NUBP2Q9Y5Y2 271 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 TICRRQ7Z2Z1 1910 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 A0A1B0GTH9 108 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 OR6C74A6NCV1 312 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 RASGRP1O95267 797 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 DBIP07108 87 aaKnown RBP9.23□□□□□ -0.93
LIG3-201ENST00000262327 C5AR1P21730 350 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 TLX1P31314 330 aaPredicted RBP9.23□□□□□ -0.93
LIG3-201ENST00000262327 RPS27P42677 84 aaKnown RBP9.23□□□□□ -0.93
LIG3-201ENST00000262327 NRG3P56975 720 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 PPP1CAP62136 330 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 RPS15P62841 145 aaKnown RBP9.23□□□□□ -0.93
LIG3-201ENST00000262327 CAMK2DQ13557 499 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 ALG10BQ5I7T1 473 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms