RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	MAP3K2	Q9Y2U5	619 aa		13.27	□□□□□ -0.29
SCN1A-222	ENST00000642141	ANKRD36C	Q5JPF3	1778 aa		13.27	□□□□□ -0.29
SCN1A-222	ENST00000642141	TAF1	P21675	1872 aa		13.26	□□□□□ -0.29
SCN1A-222	ENST00000642141	GRIPAP1	Q4V328	841 aa		13.26	□□□□□ -0.29
SCN1A-222	ENST00000642141	MAP1S	Q66K74	1059 aa	Predicted RBP	13.26	□□□□□ -0.29
SCN1A-222	ENST00000642141	G2E3	Q7L622	706 aa		13.26	□□□□□ -0.29
SCN1A-222	ENST00000642141	LDHD	Q86WU2	507 aa		13.26	□□□□□ -0.29
SCN1A-222	ENST00000642141	LAMB2	P55268	1798 aa		13.25	□□□□□ -0.29
SCN1A-222	ENST00000642141	RIMBP2	O15034	1052 aa		13.25	□□□□□ -0.29
SCN1A-222	ENST00000642141	RAD17	O75943	681 aa		13.25	□□□□□ -0.29
SCN1A-222	ENST00000642141	EPS15	P42566	896 aa		13.25	□□□□□ -0.29
SCN1A-222	ENST00000642141	TRIM28	Q13263	835 aa	Known RBP	13.25	□□□□□ -0.29
SCN1A-222	ENST00000642141	CCDC27	Q2M243	656 aa		13.25	□□□□□ -0.29
SCN1A-222	ENST00000642141	TWISTNB	Q3B726	338 aa	Predicted RBP	13.25	□□□□□ -0.29
SCN1A-222	ENST00000642141	GPR101	Q96P66	508 aa	Predicted RBP	13.25	□□□□□ -0.29
SCN1A-222	ENST00000642141	STK31	Q9BXU1	1019 aa		13.25	□□□□□ -0.29
SCN1A-222	ENST00000642141	SEC31B	Q9NQW1	1179 aa		13.25	□□□□□ -0.29
SCN1A-222	ENST00000642141	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.25	□□□□□ -0.29
SCN1A-222	ENST00000642141	PCNT	O95613	3336 aa		13.25	□□□□□ -0.29
SCN1A-222	ENST00000642141	PI4KAP2	A4QPH2	592 aa		13.24	□□□□□ -0.29
SCN1A-222	ENST00000642141	DDX58	O95786	925 aa	Known RBP	13.24	□□□□□ -0.29
SCN1A-222	ENST00000642141	SLC4A2	P04920	1241 aa		13.24	□□□□□ -0.29
SCN1A-222	ENST00000642141	LMOD1	P29536	600 aa	Predicted RBP	13.24	□□□□□ -0.29
SCN1A-222	ENST00000642141	GPSM2	P81274	684 aa		13.24	□□□□□ -0.29
SCN1A-222	ENST00000642141	CXCL9	Q07325	125 aa		13.24	□□□□□ -0.29
SCN1A-222	ENST00000642141	SF3B3	Q15393	1217 aa	Known RBP	13.24	□□□□□ -0.29
SCN1A-222	ENST00000642141	PI4KAP1	Q8N8J0	262 aa		13.24	□□□□□ -0.29
SCN1A-222	ENST00000642141	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.24	□□□□□ -0.29
SCN1A-222	ENST00000642141	SUPT20H	Q8NEM7	779 aa		13.24	□□□□□ -0.29
SCN1A-222	ENST00000642141	METTL22	Q9BUU2	404 aa	Predicted RBP	13.24	□□□□□ -0.29
SCN1A-222	ENST00000642141	CWC25	Q9NXE8	425 aa	Predicted RBP	13.24	□□□□□ -0.29
SCN1A-222	ENST00000642141	MKRN1	Q9UHC7	482 aa	Known RBP	13.24	□□□□□ -0.29
SCN1A-222	ENST00000642141	ZNRF3	Q9ULT6	936 aa		13.24	□□□□□ -0.29
SCN1A-222	ENST00000642141	C6orf229	H3BNL8	230 aa		13.23	□□□□□ -0.29
SCN1A-222	ENST00000642141	SCNN1D	P51172	638 aa		13.23	□□□□□ -0.29
SCN1A-222	ENST00000642141	CWF19L2	Q2TBE0	894 aa	Known RBP	13.23	□□□□□ -0.29
SCN1A-222	ENST00000642141	PNMA8A	Q86V59	439 aa	Predicted RBP	13.23	□□□□□ -0.29
SCN1A-222	ENST00000642141	CNTROB	Q8N137	903 aa		13.23	□□□□□ -0.29
SCN1A-222	ENST00000642141	CCDC191	Q8NCU4	936 aa		13.23	□□□□□ -0.29
SCN1A-222	ENST00000642141	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.23	□□□□□ -0.29
SCN1A-222	ENST00000642141	COL4A1	P02462	1669 aa		13.22	□□□□□ -0.29
SCN1A-222	ENST00000642141	FANCI	Q9NVI1	1328 aa		13.22	□□□□□ -0.29
SCN1A-222	ENST00000642141	ITGBL1	O95965	494 aa	Predicted RBP	13.22	□□□□□ -0.29
SCN1A-222	ENST00000642141	IGKV5-2	P06315	115 aa		13.22	□□□□□ -0.29
SCN1A-222	ENST00000642141	GMPS	P49915	693 aa	Predicted RBP	13.22	□□□□□ -0.29
SCN1A-222	ENST00000642141	RPS8	P62241	208 aa	Known RBP	13.22	□□□□□ -0.29
SCN1A-222	ENST00000642141	FMR1	Q06787	632 aa	Known RBP eCLIP	13.22	□□□□□ -0.29
SCN1A-222	ENST00000642141	KIAA2012	Q0VF49	1180 aa		13.22	□□□□□ -0.29
SCN1A-222	ENST00000642141	DOK7	Q18PE1	504 aa		13.22	□□□□□ -0.29
SCN1A-222	ENST00000642141	KSR2	Q6VAB6	950 aa		13.22	□□□□□ -0.29
SCN1A-222	ENST00000642141	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.22	□□□□□ -0.29
SCN1A-222	ENST00000642141	POLL	Q9UGP5	575 aa		13.22	□□□□□ -0.29
SCN1A-222	ENST00000642141	DDX60	Q8IY21	1712 aa	Known RBP	13.22	□□□□□ -0.29
SCN1A-222	ENST00000642141	SHTN1	A0MZ66	631 aa		13.21	□□□□□ -0.29
SCN1A-222	ENST00000642141	YDJC	A8MPS7	323 aa		13.21	□□□□□ -0.29
SCN1A-222	ENST00000642141	PCCA	P05165	728 aa	Predicted RBP	13.21	□□□□□ -0.29
SCN1A-222	ENST00000642141	EXOSC9	Q06265	439 aa	Known RBP	13.21	□□□□□ -0.29
SCN1A-222	ENST00000642141	WASHC4	Q2M389	1173 aa		13.21	□□□□□ -0.29
SCN1A-222	ENST00000642141	JMY	Q8N9B5	988 aa		13.21	□□□□□ -0.29
SCN1A-222	ENST00000642141	CHMP4A	Q9BY43	222 aa		13.21	□□□□□ -0.29
SCN1A-222	ENST00000642141	DBNDD1	Q9H9R9	158 aa		13.21	□□□□□ -0.29
SCN1A-222	ENST00000642141	KCNQ5	Q9NR82	932 aa		13.21	□□□□□ -0.29
SCN1A-222	ENST00000642141	CREBZF	Q9NS37	354 aa		13.21	□□□□□ -0.29
SCN1A-222	ENST00000642141	SCN4A	P35499	1836 aa		13.2	□□□□□ -0.3
SCN1A-222	ENST00000642141	IL16	Q14005	1332 aa		13.2	□□□□□ -0.3
SCN1A-222	ENST00000642141	PASK	Q96RG2	1323 aa		13.2	□□□□□ -0.3
SCN1A-222	ENST00000642141	PDE8A	O60658	829 aa		13.2	□□□□□ -0.3
SCN1A-222	ENST00000642141	CCDC152	Q4G0S7	254 aa		13.2	□□□□□ -0.3
SCN1A-222	ENST00000642141	CIAPIN1	Q6FI81	312 aa		13.2	□□□□□ -0.3
SCN1A-222	ENST00000642141	TMC4	Q7Z404	712 aa		13.2	□□□□□ -0.3
SCN1A-222	ENST00000642141	WDR63	Q8IWG1	891 aa		13.2	□□□□□ -0.3
SCN1A-222	ENST00000642141	BCL2L13	Q9BXK5	485 aa		13.2	□□□□□ -0.3
SCN1A-222	ENST00000642141	VPS33B	Q9H267	617 aa		13.2	□□□□□ -0.3
SCN1A-222	ENST00000642141	GPRC5D	Q9NZD1	345 aa		13.2	□□□□□ -0.3
SCN1A-222	ENST00000642141	ANKIB1	Q9P2G1	1089 aa		13.2	□□□□□ -0.3
SCN1A-222	ENST00000642141	TRAF5	O00463	557 aa		13.19	□□□□□ -0.3
SCN1A-222	ENST00000642141	NEXN	Q0ZGT2	675 aa		13.19	□□□□□ -0.3
SCN1A-222	ENST00000642141	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.19	□□□□□ -0.3
SCN1A-222	ENST00000642141	LTBP1	Q14766	1721 aa		13.19	□□□□□ -0.3
SCN1A-222	ENST00000642141	WTIP	A6NIX2	430 aa	Predicted RBP	13.18	□□□□□ -0.3
SCN1A-222	ENST00000642141	TMEM88B	A6NKF7	163 aa		13.18	□□□□□ -0.3
SCN1A-222	ENST00000642141	NEURL1B	A8MQ27	555 aa		13.18	□□□□□ -0.3
SCN1A-222	ENST00000642141	VAMP4	O75379	141 aa		13.18	□□□□□ -0.3
SCN1A-222	ENST00000642141	UFL1	O94874	794 aa		13.18	□□□□□ -0.3
SCN1A-222	ENST00000642141	HSP90B1	P14625	803 aa	Known RBP	13.18	□□□□□ -0.3
SCN1A-222	ENST00000642141	FLII	Q13045	1269 aa		13.18	□□□□□ -0.3
SCN1A-222	ENST00000642141	FKBP5	Q13451	457 aa	Predicted RBP	13.18	□□□□□ -0.3
SCN1A-222	ENST00000642141	TNIP1	Q15025	636 aa		13.18	□□□□□ -0.3
SCN1A-222	ENST00000642141	UBE3B	Q7Z3V4	1068 aa		13.18	□□□□□ -0.3
SCN1A-222	ENST00000642141	TBC1D16	Q8TBP0	767 aa		13.18	□□□□□ -0.3
SCN1A-222	ENST00000642141	DUOX1	Q9NRD9	1551 aa		13.17	□□□□□ -0.3
SCN1A-222	ENST00000642141		G3V3G9	751 aa		13.17	□□□□□ -0.3
SCN1A-222	ENST00000642141	PSMD14	O00487	310 aa		13.17	□□□□□ -0.3
SCN1A-222	ENST00000642141	CTSW	P56202	376 aa		13.17	□□□□□ -0.3
SCN1A-222	ENST00000642141	DCAF8	Q5TAQ9	597 aa		13.17	□□□□□ -0.3
SCN1A-222	ENST00000642141	USP50	Q70EL3	339 aa	Predicted RBP	13.17	□□□□□ -0.3
SCN1A-222	ENST00000642141	ANKRD18A	Q8IVF6	992 aa		13.17	□□□□□ -0.3
SCN1A-222	ENST00000642141	GREM2	Q9H772	168 aa		13.17	□□□□□ -0.3
SCN1A-222	ENST00000642141	ADARB2	Q9NS39	739 aa	Known RBP	13.17	□□□□□ -0.3
SCN1A-222	ENST00000642141	CNOT7	Q9UIV1	285 aa	Known RBP	13.17	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms