RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 CARMIL3Q8ND23 1372 aa23.53■■□□□ 1.36
CLN3-258ENST00000637184 DDX60Q8IY21 1712 aaKnown RBP23.53■■□□□ 1.36
CLN3-258ENST00000637184 SLC15A2Q16348 729 aa23.52■■□□□ 1.36
CLN3-258ENST00000637184 TPTE2Q6XPS3 522 aa23.52■■□□□ 1.36
CLN3-258ENST00000637184 ERC1Q8IUD2 1116 aa23.52■■□□□ 1.36
CLN3-258ENST00000637184 KIF1BPQ96EK5 621 aa23.52■■□□□ 1.36
CLN3-258ENST00000637184 ERFEQ4G0M1 354 aa23.52■■□□□ 1.36
CLN3-258ENST00000637184 CCDC85AQ96PX6 553 aaPredicted RBP23.52■■□□□ 1.36
CLN3-258ENST00000637184 SIL1Q9H173 461 aa23.52■■□□□ 1.36
CLN3-258ENST00000637184 ANO8Q9HCE9 1232 aaPredicted RBP23.52■■□□□ 1.36
CLN3-258ENST00000637184 PNPLA7Q6ZV29 1317 aa23.51■■□□□ 1.35
CLN3-258ENST00000637184 IFIT5Q13325 482 aaKnown RBP23.51■■□□□ 1.35
CLN3-258ENST00000637184 FAM161AQ3B820 660 aa23.51■■□□□ 1.35
CLN3-258ENST00000637184 RHPN1Q8TCX5 695 aa23.51■■□□□ 1.35
CLN3-258ENST00000637184 NPHP1O15259 732 aa23.5■■□□□ 1.35
CLN3-258ENST00000637184 GREM2Q9H772 168 aa23.49■■□□□ 1.35
CLN3-258ENST00000637184 TM4SF1P30408 202 aa23.48■■□□□ 1.35
CLN3-258ENST00000637184 SLC10A5Q5PT55 438 aa23.48■■□□□ 1.35
CLN3-258ENST00000637184 C16orf71Q8IYS4 520 aaPredicted RBP23.48■■□□□ 1.35
CLN3-258ENST00000637184 NLGN1Q8N2Q7 840 aa23.48■■□□□ 1.35
CLN3-258ENST00000637184 IL1RAPL2Q9NP60 686 aa23.48■■□□□ 1.35
CLN3-258ENST00000637184 ANKRD18BA2A2Z9 1011 aa23.47■■□□□ 1.35
CLN3-258ENST00000637184 ITGA6P23229 1130 aa23.47■■□□□ 1.35
CLN3-258ENST00000637184 TAF7LQ5H9L4 462 aa23.47■■□□□ 1.35
CLN3-258ENST00000637184 QSER1Q2KHR3 1735 aa23.47■■□□□ 1.35
CLN3-258ENST00000637184 CCDC152Q4G0S7 254 aa23.47■■□□□ 1.35
CLN3-258ENST00000637184 CNBD1Q8NA66 436 aa23.46■■□□□ 1.35
CLN3-258ENST00000637184 ZNF594Q96JF6 807 aaPredicted RBP23.46■■□□□ 1.35
CLN3-258ENST00000637184 ABCC12Q96J65 1359 aa23.46■■□□□ 1.35
CLN3-258ENST00000637184 SASH1O94885 1247 aa23.45■■□□□ 1.34
CLN3-258ENST00000637184 SERPINB2P05120 415 aa23.45■■□□□ 1.34
CLN3-258ENST00000637184 PLEKHM2Q8IWE5 1019 aa23.45■■□□□ 1.34
CLN3-258ENST00000637184 CLASRPQ8N2M8 674 aaKnown RBP23.45■■□□□ 1.34
CLN3-258ENST00000637184 FBXO3Q9UK99 471 aa23.45■■□□□ 1.34
CLN3-258ENST00000637184 EYA2O00167 538 aa23.44■■□□□ 1.34
CLN3-258ENST00000637184 CIAO1O76071 339 aa23.44■■□□□ 1.34
CLN3-258ENST00000637184 NLRP3Q96P20 1036 aa23.44■■□□□ 1.34
CLN3-258ENST00000637184 RTL9Q8NET4 1388 aa23.43■■□□□ 1.34
CLN3-258ENST00000637184 IL15P40933 162 aaPredicted RBP23.43■■□□□ 1.34
CLN3-258ENST00000637184 OTUD7AQ8TE49 926 aaPredicted RBP23.43■■□□□ 1.34
CLN3-258ENST00000637184 CASZ1Q86V15 1759 aa23.43■■□□□ 1.34
CLN3-258ENST00000637184 POLRMTO00411 1230 aaKnown RBP23.42■■□□□ 1.34
CLN3-258ENST00000637184 DDR1Q08345 913 aa23.42■■□□□ 1.34
CLN3-258ENST00000637184 SF3B3Q15393 1217 aaKnown RBP23.42■■□□□ 1.34
CLN3-258ENST00000637184 CCDC24Q8N4L8 307 aa23.42■■□□□ 1.34
CLN3-258ENST00000637184 PRR5LQ6MZQ0 368 aa23.42■■□□□ 1.34
CLN3-258ENST00000637184 ATG9AQ7Z3C6 839 aa23.42■■□□□ 1.34
CLN3-258ENST00000637184 ST5P78524 1137 aa23.41■■□□□ 1.34
CLN3-258ENST00000637184 LRRC24Q50LG9 513 aa23.41■■□□□ 1.34
CLN3-258ENST00000637184 TFCP2Q12800 502 aa23.4■■□□□ 1.34
CLN3-258ENST00000637184 LDHAL6AQ6ZMR3 332 aa23.4■■□□□ 1.34
CLN3-258ENST00000637184 C3orf67Q6ZVT6 689 aa23.4■■□□□ 1.34
CLN3-258ENST00000637184 PUS3Q9BZE2 481 aaKnown RBP23.4■■□□□ 1.34
CLN3-258ENST00000637184 MX1P20591 662 aa23.4■■□□□ 1.34
CLN3-258ENST00000637184 SEC31BQ9NQW1 1179 aa23.4■■□□□ 1.34
CLN3-258ENST00000637184 SALL3Q9BXA9 1300 aa23.39■■□□□ 1.33
CLN3-258ENST00000637184 AACSQ86V21 672 aa23.39■■□□□ 1.33
CLN3-258ENST00000637184 UPF1Q92900 1129 aaKnown RBP eCLIP23.39■■□□□ 1.33
CLN3-258ENST00000637184 IFIT2P09913 472 aaKnown RBP23.38■■□□□ 1.33
CLN3-258ENST00000637184 PDE1AP54750 535 aa23.38■■□□□ 1.33
CLN3-258ENST00000637184 MSL1Q68DK7 614 aa23.38■■□□□ 1.33
CLN3-258ENST00000637184 OSBPL3Q9H4L5 887 aa23.38■■□□□ 1.33
CLN3-258ENST00000637184 CNNM1Q9NRU3 951 aa23.38■■□□□ 1.33
CLN3-258ENST00000637184 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.38■■□□□ 1.33
CLN3-258ENST00000637184 RIC1Q4ADV7 1423 aa23.37■■□□□ 1.33
CLN3-258ENST00000637184 MMP10P09238 476 aa23.37■■□□□ 1.33
CLN3-258ENST00000637184 IGHMBP2P38935 993 aaKnown RBP23.37■■□□□ 1.33
CLN3-258ENST00000637184 CDC5LQ99459 802 aaKnown RBP23.37■■□□□ 1.33
CLN3-258ENST00000637184 PARP3Q9Y6F1 533 aa23.37■■□□□ 1.33
CLN3-258ENST00000637184 EAF2Q96CJ1 260 aaPredicted RBP23.37■■□□□ 1.33
CLN3-258ENST00000637184 MPHOSPH8Q99549 860 aa23.37■■□□□ 1.33
CLN3-258ENST00000637184 CEP126Q9P2H0 1117 aa23.37■■□□□ 1.33
CLN3-258ENST00000637184 STAP2Q9UGK3 403 aa23.37■■□□□ 1.33
CLN3-258ENST00000637184 RIPOR2Q9Y4F9 1068 aa23.37■■□□□ 1.33
CLN3-258ENST00000637184 TNRC6CQ9HCJ0 1690 aaKnown RBP23.36■■□□□ 1.33
CLN3-258ENST00000637184 TNNI3KQ59H18 835 aa23.36■■□□□ 1.33
CLN3-258ENST00000637184 BMP2KLQ5H9B9 411 aa23.36■■□□□ 1.33
CLN3-258ENST00000637184 FPGT-TNNI3KV9GXZ4 949 aa23.36■■□□□ 1.33
CLN3-258ENST00000637184 TTC22Q5TAA0 569 aa23.35■■□□□ 1.33
CLN3-258ENST00000637184 GPR108Q9NPR9 543 aa23.35■■□□□ 1.33
CLN3-258ENST00000637184 LRP5O75197 1615 aa23.35■■□□□ 1.33
CLN3-258ENST00000637184 GPATCH3Q96I76 525 aa23.35■■□□□ 1.33
CLN3-258ENST00000637184 SPEF2Q9C093 1822 aa23.34■■□□□ 1.33
CLN3-258ENST00000637184 NRXN2Q9P2S2 1712 aa23.34■■□□□ 1.33
CLN3-258ENST00000637184 METTL24Q5JXM2 366 aa23.34■■□□□ 1.33
CLN3-258ENST00000637184 ANKRD18AQ8IVF6 992 aa23.34■■□□□ 1.33
CLN3-258ENST00000637184 CCDC8Q9H0W5 538 aaPredicted RBP23.34■■□□□ 1.33
CLN3-258ENST00000637184 AOX1Q06278 1338 aa23.34■■□□□ 1.33
CLN3-258ENST00000637184 DDX46Q7L014 1031 aaKnown RBP23.33■■□□□ 1.33
CLN3-258ENST00000637184 TAF1P21675 1872 aa23.32■■□□□ 1.32
CLN3-258ENST00000637184 TSHZ3Q63HK5 1081 aa23.32■■□□□ 1.32
CLN3-258ENST00000637184 AKAP2Q9Y2D5 859 aa23.32■■□□□ 1.32
CLN3-258ENST00000637184 TTC41PQ6P2S7 1318 aa23.32■■□□□ 1.32
CLN3-258ENST00000637184 MROH5Q6ZUA9 1318 aa23.32■■□□□ 1.32
CLN3-258ENST00000637184 SLC16A10Q8TF71 515 aa23.32■■□□□ 1.32
CLN3-258ENST00000637184 PDGFDQ9GZP0 370 aaPredicted RBP23.32■■□□□ 1.32
CLN3-258ENST00000637184 GSPT1P15170 499 aaKnown RBP23.31■■□□□ 1.32
CLN3-258ENST00000637184 ECHDC1Q9NTX5 307 aa23.31■■□□□ 1.32
CLN3-258ENST00000637184 RPGRQ92834 1020 aaKnown RBP23.3■■□□□ 1.32
CLN3-258ENST00000637184 CELF1Q92879 486 aaKnown RBP23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms