RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 MX1P20591 662 aa22.69■■□□□ 1.22
CLN3-254ENST00000637050 TTC22Q5TAA0 569 aa22.69■■□□□ 1.22
CLN3-254ENST00000637050 NUTM1Q86Y26 1132 aa22.69■■□□□ 1.22
CLN3-254ENST00000637050 CLASRPQ8N2M8 674 aaKnown RBP22.69■■□□□ 1.22
CLN3-254ENST00000637050 IFIT5Q13325 482 aaKnown RBP22.68■■□□□ 1.22
CLN3-254ENST00000637050 CAMKK2Q96RR4 588 aa22.68■■□□□ 1.22
CLN3-254ENST00000637050 NYXQ9GZU5 481 aa22.68■■□□□ 1.22
CLN3-254ENST00000637050 GREM2Q9H772 168 aa22.68■■□□□ 1.22
CLN3-254ENST00000637050 CIAO1O76071 339 aa22.68■■□□□ 1.22
CLN3-254ENST00000637050 ATG9AQ7Z3C6 839 aa22.68■■□□□ 1.22
CLN3-254ENST00000637050 FBXO3Q9UK99 471 aa22.68■■□□□ 1.22
CLN3-254ENST00000637050 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.68■■□□□ 1.22
CLN3-254ENST00000637050 EYA2O00167 538 aa22.67■■□□□ 1.22
CLN3-254ENST00000637050 GYS1P13807 737 aa22.67■■□□□ 1.22
CLN3-254ENST00000637050 ERFEQ4G0M1 354 aa22.67■■□□□ 1.22
CLN3-254ENST00000637050 ZNF594Q96JF6 807 aaPredicted RBP22.67■■□□□ 1.22
CLN3-254ENST00000637050 CCDC85AQ96PX6 553 aaPredicted RBP22.67■■□□□ 1.22
CLN3-254ENST00000637050 TFCP2L1Q9NZI6 479 aa22.67■■□□□ 1.22
CLN3-254ENST00000637050 AOX1Q06278 1338 aa22.66■■□□□ 1.22
CLN3-254ENST00000637050 GSPT1P15170 499 aaKnown RBP22.66■■□□□ 1.22
CLN3-254ENST00000637050 ITGA6P23229 1130 aa22.66■■□□□ 1.22
CLN3-254ENST00000637050 SLC10A5Q5PT55 438 aa22.66■■□□□ 1.22
CLN3-254ENST00000637050 ANKRD18BA2A2Z9 1011 aa22.65■■□□□ 1.22
CLN3-254ENST00000637050 IL15P40933 162 aaPredicted RBP22.65■■□□□ 1.22
CLN3-254ENST00000637050 NFIXQ14938 502 aa22.65■■□□□ 1.22
CLN3-254ENST00000637050 CARMIL3Q8ND23 1372 aa22.65■■□□□ 1.22
CLN3-254ENST00000637050 RTL9Q8NET4 1388 aa22.65■■□□□ 1.22
CLN3-254ENST00000637050 TUBGCP6Q96RT7 1819 aa22.65■■□□□ 1.22
CLN3-254ENST00000637050 EN1Q05925 392 aaPredicted RBP22.65■■□□□ 1.22
CLN3-254ENST00000637050 EZH2Q15910 746 aaKnown RBP22.65■■□□□ 1.22
CLN3-254ENST00000637050 NBPF5PQ86XG9 351 aaPredicted RBP22.65■■□□□ 1.22
CLN3-254ENST00000637050 TFCP2Q12800 502 aa22.64■■□□□ 1.21
CLN3-254ENST00000637050 LRRC24Q50LG9 513 aa22.64■■□□□ 1.21
CLN3-254ENST00000637050 TPTE2Q6XPS3 522 aa22.64■■□□□ 1.21
CLN3-254ENST00000637050 FLAD1Q8NFF5 587 aa22.64■■□□□ 1.21
CLN3-254ENST00000637050 EAF2Q96CJ1 260 aaPredicted RBP22.64■■□□□ 1.21
CLN3-254ENST00000637050 TAF7LQ5H9L4 462 aa22.63■■□□□ 1.21
CLN3-254ENST00000637050 AACSQ86V21 672 aa22.63■■□□□ 1.21
CLN3-254ENST00000637050 PUS3Q9BZE2 481 aaKnown RBP22.63■■□□□ 1.21
CLN3-254ENST00000637050 IFIT2P09913 472 aaKnown RBP22.62■■□□□ 1.21
CLN3-254ENST00000637050 CCDC152Q4G0S7 254 aa22.62■■□□□ 1.21
CLN3-254ENST00000637050 ABCC12Q96J65 1359 aa22.62■■□□□ 1.21
CLN3-254ENST00000637050 LRP5O75197 1615 aa22.62■■□□□ 1.21
CLN3-254ENST00000637050 GTF2E1P29083 439 aaPredicted RBP22.62■■□□□ 1.21
CLN3-254ENST00000637050 TM4SF1P30408 202 aa22.62■■□□□ 1.21
CLN3-254ENST00000637050 SF3B2Q13435 895 aaKnown RBP22.62■■□□□ 1.21
CLN3-254ENST00000637050 SF3B3Q15393 1217 aaKnown RBP22.62■■□□□ 1.21
CLN3-254ENST00000637050 TSHZ3Q63HK5 1081 aa22.62■■□□□ 1.21
CLN3-254ENST00000637050 COL23A1Q86Y22 540 aaPredicted RBP22.62■■□□□ 1.21
CLN3-254ENST00000637050 GPR108Q9NPR9 543 aa22.62■■□□□ 1.21
CLN3-254ENST00000637050 RBM19Q9Y4C8 960 aaKnown RBP22.62■■□□□ 1.21
CLN3-254ENST00000637050 TTC41PQ6P2S7 1318 aa22.61■■□□□ 1.21
CLN3-254ENST00000637050 BAG6P46379 1132 aa22.61■■□□□ 1.21
CLN3-254ENST00000637050 TNNI3KQ59H18 835 aa22.61■■□□□ 1.21
CLN3-254ENST00000637050 FPGT-TNNI3KV9GXZ4 949 aa22.61■■□□□ 1.21
CLN3-254ENST00000637050 PI4K2BQ8TCG2 481 aa22.6■■□□□ 1.21
CLN3-254ENST00000637050 LDHAL6AQ6ZMR3 332 aa22.59■■□□□ 1.21
CLN3-254ENST00000637050 RIPOR2Q9Y4F9 1068 aa22.59■■□□□ 1.21
CLN3-254ENST00000637050 PNPLA7Q6ZV29 1317 aa22.59■■□□□ 1.21
CLN3-254ENST00000637050 CASZ1Q86V15 1759 aa22.59■■□□□ 1.21
CLN3-254ENST00000637050 SDSP20132 328 aa22.58■■□□□ 1.21
CLN3-254ENST00000637050 C3orf67Q6ZVT6 689 aa22.58■■□□□ 1.21
CLN3-254ENST00000637050 CCDC8Q9H0W5 538 aaPredicted RBP22.58■■□□□ 1.21
CLN3-254ENST00000637050 ECHDC1Q9NTX5 307 aa22.58■■□□□ 1.21
CLN3-254ENST00000637050 GPATCH3Q96I76 525 aa22.58■■□□□ 1.2
CLN3-254ENST00000637050 SEC31BQ9NQW1 1179 aa22.58■■□□□ 1.2
CLN3-254ENST00000637050 TLR7Q9NYK1 1049 aaKnown RBP22.58■■□□□ 1.2
CLN3-254ENST00000637050 CEP126Q9P2H0 1117 aa22.58■■□□□ 1.2
CLN3-254ENST00000637050 ANO8Q9HCE9 1232 aaPredicted RBP22.57■■□□□ 1.2
CLN3-254ENST00000637050 RIC1Q4ADV7 1423 aa22.56■■□□□ 1.2
CLN3-254ENST00000637050 ERC2O15083 957 aa22.56■■□□□ 1.2
CLN3-254ENST00000637050 GLRX3O76003 335 aaKnown RBP22.56■■□□□ 1.2
CLN3-254ENST00000637050 SLC15A2Q16348 729 aa22.56■■□□□ 1.2
CLN3-254ENST00000637050 CNBD1Q8NA66 436 aa22.56■■□□□ 1.2
CLN3-254ENST00000637050 NLRP3Q96P20 1036 aa22.56■■□□□ 1.2
CLN3-254ENST00000637050 ZNF609O15014 1411 aa22.56■■□□□ 1.2
CLN3-254ENST00000637050 NLGN1Q8N2Q7 840 aa22.55■■□□□ 1.2
CLN3-254ENST00000637050 CNNM1Q9NRU3 951 aa22.55■■□□□ 1.2
CLN3-254ENST00000637050 DBNLQ9UJU6 430 aaKnown RBP22.55■■□□□ 1.2
CLN3-254ENST00000637050 QSER1Q2KHR3 1735 aa22.55■■□□□ 1.2
CLN3-254ENST00000637050 CDC45O75419 566 aa22.55■■□□□ 1.2
CLN3-254ENST00000637050 SERPINB2P05120 415 aa22.55■■□□□ 1.2
CLN3-254ENST00000637050 DDR1Q08345 913 aa22.55■■□□□ 1.2
CLN3-254ENST00000637050 PRR5LQ6MZQ0 368 aa22.55■■□□□ 1.2
CLN3-254ENST00000637050 DEFB132Q7Z7B7 95 aa22.55■■□□□ 1.2
CLN3-254ENST00000637050 CCDC125Q86Z20 511 aa22.55■■□□□ 1.2
CLN3-254ENST00000637050 STK32BQ9NY57 414 aa22.55■■□□□ 1.2
CLN3-254ENST00000637050 POLRMTO00411 1230 aaKnown RBP22.54■■□□□ 1.2
CLN3-254ENST00000637050 MSH5O43196 834 aa22.54■■□□□ 1.2
CLN3-254ENST00000637050 SEC24BO95487 1268 aa22.54■■□□□ 1.2
CLN3-254ENST00000637050 CDC5LQ99459 802 aaKnown RBP22.54■■□□□ 1.2
CLN3-254ENST00000637050 AKAP2Q9Y2D5 859 aa22.54■■□□□ 1.2
CLN3-254ENST00000637050 TNRC6CQ9HCJ0 1690 aaKnown RBP22.53■■□□□ 1.2
CLN3-254ENST00000637050 NPHP1O15259 732 aa22.53■■□□□ 1.2
CLN3-254ENST00000637050 METTL24Q5JXM2 366 aa22.53■■□□□ 1.2
CLN3-254ENST00000637050 TBC1D9Q6ZT07 1266 aa22.53■■□□□ 1.2
CLN3-254ENST00000637050 CCDC24Q8N4L8 307 aa22.53■■□□□ 1.2
CLN3-254ENST00000637050 VGLL2Q8N8G2 317 aa22.53■■□□□ 1.2
CLN3-254ENST00000637050 IGHMBP2P38935 993 aaKnown RBP22.52■■□□□ 1.2
CLN3-254ENST00000637050 MPHOSPH8Q99549 860 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms