RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 ZNRF3Q9ULT6 936 aa21.04■□□□□ 0.96
CLN3-246ENST00000636228 ABT1Q9ULW3 272 aaKnown RBP21.04■□□□□ 0.96
CLN3-246ENST00000636228 CFAP44Q96MT7 982 aa21.03■□□□□ 0.96
CLN3-246ENST00000636228 DBF4Q9UBU7 674 aaPredicted RBP21.03■□□□□ 0.96
CLN3-246ENST00000636228 TRAF5O00463 557 aa21.02■□□□□ 0.96
CLN3-246ENST00000636228 USP50Q70EL3 339 aaPredicted RBP21.02■□□□□ 0.96
CLN3-246ENST00000636228 ISCA1Q9BUE6 129 aa21.02■□□□□ 0.96
CLN3-246ENST00000636228 VPS33BQ9H267 617 aa21.02■□□□□ 0.96
CLN3-246ENST00000636228 PRKRIP1Q9H875 184 aaPredicted RBP21.02■□□□□ 0.96
CLN3-246ENST00000636228 ELL2O00472 640 aaPredicted RBP21.01■□□□□ 0.95
CLN3-246ENST00000636228 APAF1O14727 1248 aa21.01■□□□□ 0.95
CLN3-246ENST00000636228 RAD17O75943 681 aa21.01■□□□□ 0.95
CLN3-246ENST00000636228 HOXB7P09629 217 aa21.01■□□□□ 0.95
CLN3-246ENST00000636228 GMPSP49915 693 aaPredicted RBP21.01■□□□□ 0.95
CLN3-246ENST00000636228 GPRC5DQ9NZD1 345 aa21.01■□□□□ 0.95
CLN3-246ENST00000636228 RASSF10A6NK89 507 aa21■□□□□ 0.95
CLN3-246ENST00000636228 KIAA2012Q0VF49 1180 aa21■□□□□ 0.95
CLN3-246ENST00000636228 CELF1Q92879 486 aaKnown RBP21■□□□□ 0.95
CLN3-246ENST00000636228 HYPKQ9NX55 129 aa21■□□□□ 0.95
CLN3-246ENST00000636228 CIAPIN1Q6FI81 312 aa20.99■□□□□ 0.95
CLN3-246ENST00000636228 PHAXQ9H814 394 aaKnown RBP20.99■□□□□ 0.95
CLN3-246ENST00000636228 ADARB2Q9NS39 739 aaKnown RBP20.99■□□□□ 0.95
CLN3-246ENST00000636228 ZNF853P0CG23 659 aa20.98■□□□□ 0.95
CLN3-246ENST00000636228 CST9Q5W186 159 aa20.98■□□□□ 0.95
CLN3-246ENST00000636228 AIDAQ96BJ3 306 aa20.98■□□□□ 0.95
CLN3-246ENST00000636228 BCL2L13Q9BXK5 485 aa20.98■□□□□ 0.95
CLN3-246ENST00000636228 WBP1LQ9NX94 342 aa20.98■□□□□ 0.95
CLN3-246ENST00000636228 WDR33Q9C0J8 1336 aaKnown RBP20.98■□□□□ 0.95
CLN3-246ENST00000636228 SHTN1A0MZ66 631 aa20.97■□□□□ 0.95
CLN3-246ENST00000636228 YDJCA8MPS7 323 aa20.97■□□□□ 0.95
CLN3-246ENST00000636228 GRM1Q13255 1194 aa20.97■□□□□ 0.95
CLN3-246ENST00000636228 PAXIP1Q6ZW49 1069 aaPredicted RBP20.97■□□□□ 0.95
CLN3-246ENST00000636228 NSFL1CQ9UNZ2 370 aaKnown RBP20.97■□□□□ 0.95
CLN3-246ENST00000636228 RIMBP2O15034 1052 aa20.96■□□□□ 0.95
CLN3-246ENST00000636228 CTCFP49711 727 aaPredicted RBP20.96■□□□□ 0.95
CLN3-246ENST00000636228 HIRAP54198 1017 aaPredicted RBP20.96■□□□□ 0.95
CLN3-246ENST00000636228 SF3B3Q15393 1217 aaKnown RBP20.96■□□□□ 0.95
CLN3-246ENST00000636228 RIC3Q7Z5B4 369 aa20.96■□□□□ 0.95
CLN3-246ENST00000636228 IRS4O14654 1257 aaPredicted RBP20.95■□□□□ 0.94
CLN3-246ENST00000636228 LBX1P52954 281 aa20.95■□□□□ 0.94
CLN3-246ENST00000636228 GPSM2P81274 684 aa20.95■□□□□ 0.94
CLN3-246ENST00000636228 TNIP1Q15025 636 aa20.95■□□□□ 0.94
CLN3-246ENST00000636228 JARID2Q92833 1246 aaPredicted RBP20.95■□□□□ 0.94
CLN3-246ENST00000636228 GPR101Q96P66 508 aaPredicted RBP20.95■□□□□ 0.94
CLN3-246ENST00000636228 GLIS2Q9BZE0 524 aaPredicted RBP20.95■□□□□ 0.94
CLN3-246ENST00000636228 ZBTB12Q9Y330 459 aaPredicted RBP20.95■□□□□ 0.94
CLN3-246ENST00000636228 LAMB2P55268 1798 aa20.95■□□□□ 0.94
CLN3-246ENST00000636228 ANKRD36CQ5JPF3 1778 aa20.95■□□□□ 0.94
CLN3-246ENST00000636228 WASHC4Q2M389 1173 aa20.94■□□□□ 0.94
CLN3-246ENST00000636228 CYP4F22Q6NT55 531 aa20.94■□□□□ 0.94
CLN3-246ENST00000636228 TMC4Q7Z404 712 aa20.94■□□□□ 0.94
CLN3-246ENST00000636228 C8orf58Q8NAV2 365 aa20.94■□□□□ 0.94
CLN3-246ENST00000636228 TRPM4Q8TD43 1214 aa20.94■□□□□ 0.94
CLN3-246ENST00000636228 MYD88Q99836 296 aa20.94■□□□□ 0.94
CLN3-246ENST00000636228 DBNDD1Q9H9R9 158 aa20.94■□□□□ 0.94
CLN3-246ENST00000636228 IFT57Q9NWB7 429 aa20.94■□□□□ 0.94
CLN3-246ENST00000636228 POLLQ9UGP5 575 aa20.94■□□□□ 0.94
CLN3-246ENST00000636228 CNOT7Q9UIV1 285 aaKnown RBP20.94■□□□□ 0.94
CLN3-246ENST00000636228 C6orf229H3BNL8 230 aa20.93■□□□□ 0.94
CLN3-246ENST00000636228 GNAI1P63096 354 aa20.93■□□□□ 0.94
CLN3-246ENST00000636228 GOLGA2Q08379 1002 aa20.93■□□□□ 0.94
CLN3-246ENST00000636228 TRIM28Q13263 835 aaKnown RBP20.93■□□□□ 0.94
CLN3-246ENST00000636228 CAPNS2Q96L46 248 aa20.93■□□□□ 0.94
CLN3-246ENST00000636228 PRDM10Q9NQV6 1147 aa20.93■□□□□ 0.94
CLN3-246ENST00000636228 KCNQ5Q9NR82 932 aa20.93■□□□□ 0.94
CLN3-246ENST00000636228 DOK7Q18PE1 504 aa20.92■□□□□ 0.94
CLN3-246ENST00000636228 SEC31BQ9NQW1 1179 aa20.92■□□□□ 0.94
CLN3-246ENST00000636228 DUOX1Q9NRD9 1551 aa20.92■□□□□ 0.94
CLN3-246ENST00000636228 COL4A1P02462 1669 aa20.92■□□□□ 0.94
CLN3-246ENST00000636228 TAF1P21675 1872 aa20.92■□□□□ 0.94
CLN3-246ENST00000636228 CELF2O95319 508 aaKnown RBP20.91■□□□□ 0.94
CLN3-246ENST00000636228 RPS8P62241 208 aaKnown RBP20.91■□□□□ 0.94
CLN3-246ENST00000636228 DLK2Q6UY11 383 aa20.91■□□□□ 0.94
CLN3-246ENST00000636228 MICALL2Q8IY33 904 aa20.91■□□□□ 0.94
CLN3-246ENST00000636228 ZNF408Q9H9D4 720 aa20.91■□□□□ 0.94
CLN3-246ENST00000636228 TLL2Q9Y6L7 1015 aa20.91■□□□□ 0.94
CLN3-246ENST00000636228 PSMD14O00487 310 aa20.9■□□□□ 0.94
CLN3-246ENST00000636228 HSPA8P11142 646 aaKnown RBP20.9■□□□□ 0.94
CLN3-246ENST00000636228 MAP2K1Q02750 393 aaPredicted RBP20.9■□□□□ 0.94
CLN3-246ENST00000636228 CCDC184Q52MB2 194 aa20.9■□□□□ 0.94
CLN3-246ENST00000636228 ZBTB38Q8NAP3 1195 aaPredicted RBP20.9■□□□□ 0.94
CLN3-246ENST00000636228 CCDC85AQ96PX6 553 aaPredicted RBP20.9■□□□□ 0.94
CLN3-246ENST00000636228 PGAP2Q9UHJ9 254 aa20.9■□□□□ 0.94
CLN3-246ENST00000636228 AOC2O75106 756 aa20.89■□□□□ 0.93
CLN3-246ENST00000636228 CALD1Q05682 793 aaKnown RBP20.89■□□□□ 0.93
CLN3-246ENST00000636228 SAMD7Q7Z3H4 446 aa20.89■□□□□ 0.93
CLN3-246ENST00000636228 TSPYL6Q8N831 410 aa20.89■□□□□ 0.93
CLN3-246ENST00000636228 DDX60Q8IY21 1712 aaKnown RBP20.89■□□□□ 0.93
CLN3-246ENST00000636228 H7C1D1 291 aa20.88■□□□□ 0.93
CLN3-246ENST00000636228 ECE2O60344 883 aa20.88■□□□□ 0.93
CLN3-246ENST00000636228 USP48Q86UV5 1035 aa20.88■□□□□ 0.93
CLN3-246ENST00000636228 TBC1D16Q8TBP0 767 aa20.88■□□□□ 0.93
CLN3-246ENST00000636228 CDHR2Q9BYE9 1310 aa20.87■□□□□ 0.93
CLN3-246ENST00000636228 EGFRP00533 1210 aa20.87■□□□□ 0.93
CLN3-246ENST00000636228 ECE1P42892 770 aa20.87■□□□□ 0.93
CLN3-246ENST00000636228 TBC1D10BQ4KMP7 808 aaPredicted RBP20.87■□□□□ 0.93
CLN3-246ENST00000636228 RBM26Q5T8P6 1007 aaKnown RBP20.87■□□□□ 0.93
CLN3-246ENST00000636228 SAPCD2Q86UD0 394 aa20.87■□□□□ 0.93
CLN3-246ENST00000636228 TSR2Q969E8 191 aaKnown RBP20.87■□□□□ 0.93
CLN3-246ENST00000636228 ZC3H15Q8WU90 426 aaKnown RBP20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms