RNA–Protein interactions for RNA: ENST00000627568.2

TCF4-259, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 806 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-259	ENST00000627568	JMY	Q8N9B5	988 aa		33.09	■■■□□ 2.89
TCF4-259	ENST00000627568	TAF1	P21675	1872 aa		33.09	■■■□□ 2.89
TCF4-259	ENST00000627568	LMOD1	P29536	600 aa	Predicted RBP	33.08	■■■□□ 2.89
TCF4-259	ENST00000627568	MPND	Q8N594	471 aa		33.08	■■■□□ 2.89
TCF4-259	ENST00000627568	RTL5	Q5HYW3	569 aa	Predicted RBP	33.07	■■■□□ 2.88
TCF4-259	ENST00000627568	RTFDC1	Q9BY42	306 aa	Predicted RBP	33.07	■■■□□ 2.88
TCF4-259	ENST00000627568	CLEC11A	Q9Y240	323 aa		33.07	■■■□□ 2.88
TCF4-259	ENST00000627568	DDX58	O95786	925 aa	Known RBP	33.06	■■■□□ 2.88
TCF4-259	ENST00000627568	TSR2	Q969E8	191 aa	Known RBP	33.06	■■■□□ 2.88
TCF4-259	ENST00000627568	WWC1	Q8IX03	1113 aa		33.05	■■■□□ 2.88
TCF4-259	ENST00000627568	IRS4	O14654	1257 aa	Predicted RBP	33.04	■■■□□ 2.88
TCF4-259	ENST00000627568	HSP90B1	P14625	803 aa	Known RBP	33.04	■■■□□ 2.88
TCF4-259	ENST00000627568	SF3B3	Q15393	1217 aa	Known RBP	33.04	■■■□□ 2.88
TCF4-259	ENST00000627568	MYD88	Q99836	296 aa		33.04	■■■□□ 2.88
TCF4-259	ENST00000627568	CREBZF	Q9NS37	354 aa		33.04	■■■□□ 2.88
TCF4-259	ENST00000627568	ADAMTSL1	Q8N6G6	1762 aa		33.04	■■■□□ 2.88
TCF4-259	ENST00000627568	LRRC37A	A6NMS7	1700 aa		33.03	■■■□□ 2.88
TCF4-259	ENST00000627568	TSPYL6	Q8N831	410 aa		33.03	■■■□□ 2.88
TCF4-259	ENST00000627568	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	33.02	■■■□□ 2.88
TCF4-259	ENST00000627568	STK31	Q9BXU1	1019 aa		33.02	■■■□□ 2.88
TCF4-259	ENST00000627568	CCDC191	Q8NCU4	936 aa		33.01	■■■□□ 2.87
TCF4-259	ENST00000627568	KIAA2012	Q0VF49	1180 aa		33	■■■□□ 2.87
TCF4-259	ENST00000627568	ZNRF3	Q9ULT6	936 aa		33	■■■□□ 2.87
TCF4-259	ENST00000627568	IL16	Q14005	1332 aa		33	■■■□□ 2.87
TCF4-259	ENST00000627568	PASK	Q96RG2	1323 aa		33	■■■□□ 2.87
TCF4-259	ENST00000627568	NCBP3	Q53F19	620 aa	Known RBP	32.99	■■■□□ 2.87
TCF4-259	ENST00000627568	SCNN1D	P51172	638 aa		32.98	■■■□□ 2.87
TCF4-259	ENST00000627568	LTBP1	Q14766	1721 aa		32.98	■■■□□ 2.87
TCF4-259	ENST00000627568	CELF1	Q92879	486 aa	Known RBP	32.98	■■■□□ 2.87
TCF4-259	ENST00000627568	METTL22	Q9BUU2	404 aa	Predicted RBP	32.98	■■■□□ 2.87
TCF4-259	ENST00000627568	CWC25	Q9NXE8	425 aa	Predicted RBP	32.98	■■■□□ 2.87
TCF4-259	ENST00000627568	TWISTNB	Q3B726	338 aa	Predicted RBP	32.97	■■■□□ 2.87
TCF4-259	ENST00000627568	PCCA	P05165	728 aa	Predicted RBP	32.96	■■■□□ 2.87
TCF4-259	ENST00000627568	DUOX1	Q9NRD9	1551 aa		32.96	■■■□□ 2.87
TCF4-259	ENST00000627568	ITGBL1	O95965	494 aa	Predicted RBP	32.95	■■■□□ 2.87
TCF4-259	ENST00000627568	EPS15	P42566	896 aa		32.95	■■■□□ 2.87
TCF4-259	ENST00000627568	MAP1S	Q66K74	1059 aa	Predicted RBP	32.95	■■■□□ 2.87
TCF4-259	ENST00000627568	MAP3K2	Q9Y2U5	619 aa		32.95	■■■□□ 2.87
TCF4-259	ENST00000627568	CXCL9	Q07325	125 aa		32.94	■■■□□ 2.86
TCF4-259	ENST00000627568	CNTROB	Q8N137	903 aa		32.94	■■■□□ 2.86
TCF4-259	ENST00000627568	NSFL1C	Q9UNZ2	370 aa	Known RBP	32.94	■■■□□ 2.86
TCF4-259	ENST00000627568	IFFO2	Q5TF58	517 aa		32.93	■■■□□ 2.86
TCF4-259	ENST00000627568	CIAPIN1	Q6FI81	312 aa		32.93	■■■□□ 2.86
TCF4-259	ENST00000627568	KSR2	Q6VAB6	950 aa		32.93	■■■□□ 2.86
TCF4-259	ENST00000627568	PI4KAP2	A4QPH2	592 aa		32.92	■■■□□ 2.86
TCF4-259	ENST00000627568	TMEM88B	A6NKF7	163 aa		32.92	■■■□□ 2.86
TCF4-259	ENST00000627568	RPS8	P62241	208 aa	Known RBP	32.92	■■■□□ 2.86
TCF4-259	ENST00000627568	CCDC152	Q4G0S7	254 aa		32.92	■■■□□ 2.86
TCF4-259	ENST00000627568	USP50	Q70EL3	339 aa	Predicted RBP	32.92	■■■□□ 2.86
TCF4-259	ENST00000627568	PI4KAP1	Q8N8J0	262 aa		32.92	■■■□□ 2.86
TCF4-259	ENST00000627568	MKRN1	Q9UHC7	482 aa	Known RBP	32.92	■■■□□ 2.86
TCF4-259	ENST00000627568	PDE8A	O60658	829 aa		32.91	■■■□□ 2.86
TCF4-259	ENST00000627568	NEXN	Q0ZGT2	675 aa		32.91	■■■□□ 2.86
TCF4-259	ENST00000627568	TNIP1	Q15025	636 aa		32.91	■■■□□ 2.86
TCF4-259	ENST00000627568	GPRC5D	Q9NZD1	345 aa		32.91	■■■□□ 2.86
TCF4-259	ENST00000627568	WASHC4	Q2M389	1173 aa		32.9	■■■□□ 2.86
TCF4-259	ENST00000627568	SALL2	Q9Y467	1007 aa	Predicted RBP	32.9	■■■□□ 2.86
TCF4-259	ENST00000627568	COL4A1	P02462	1669 aa		32.9	■■■□□ 2.86
TCF4-259	ENST00000627568	CDHR2	Q9BYE9	1310 aa		32.89	■■■□□ 2.86
TCF4-259	ENST00000627568	FANCI	Q9NVI1	1328 aa		32.89	■■■□□ 2.86
TCF4-259	ENST00000627568	C6orf229	H3BNL8	230 aa		32.89	■■■□□ 2.86
TCF4-259	ENST00000627568	ADARB2	Q9NS39	739 aa	Known RBP	32.89	■■■□□ 2.86
TCF4-259	ENST00000627568	PCNT	O95613	3336 aa		32.89	■■■□□ 2.86
TCF4-259	ENST00000627568	RAD17	O75943	681 aa		32.88	■■■□□ 2.85
TCF4-259	ENST00000627568	GMPS	P49915	693 aa	Predicted RBP	32.88	■■■□□ 2.85
TCF4-259	ENST00000627568	GPSM2	P81274	684 aa		32.88	■■■□□ 2.85
TCF4-259	ENST00000627568	WDR63	Q8IWG1	891 aa		32.88	■■■□□ 2.85
TCF4-259	ENST00000627568	EYA3	Q99504	573 aa		32.88	■■■□□ 2.85
TCF4-259	ENST00000627568	BCL2L13	Q9BXK5	485 aa		32.88	■■■□□ 2.85
TCF4-259	ENST00000627568	CACNA1F	O60840	1977 aa		32.88	■■■□□ 2.85
TCF4-259	ENST00000627568	CNTNAP1	P78357	1384 aa		32.87	■■■□□ 2.85
TCF4-259	ENST00000627568	SLC4A2	P04920	1241 aa		32.87	■■■□□ 2.85
TCF4-259	ENST00000627568	JARID2	Q92833	1246 aa	Predicted RBP	32.87	■■■□□ 2.85
TCF4-259	ENST00000627568	SEC31B	Q9NQW1	1179 aa		32.87	■■■□□ 2.85
TCF4-259	ENST00000627568	POLL	Q9UGP5	575 aa		32.85	■■■□□ 2.85
TCF4-259	ENST00000627568	MYH3	P11055	1940 aa		32.85	■■■□□ 2.85
TCF4-259	ENST00000627568	YDJC	A8MPS7	323 aa		32.84	■■■□□ 2.85
TCF4-259	ENST00000627568	RIMBP2	O15034	1052 aa		32.84	■■■□□ 2.85
TCF4-259	ENST00000627568	IGKV5-2	P06315	115 aa		32.84	■■■□□ 2.85
TCF4-259	ENST00000627568	HSPA1A	P0DMV8	641 aa	Known RBP	32.84	■■■□□ 2.85
TCF4-259	ENST00000627568	HSPA1B	P0DMV9	641 aa	Known RBP	32.84	■■■□□ 2.85
TCF4-259	ENST00000627568	CCDC85A	Q96PX6	553 aa	Predicted RBP	32.84	■■■□□ 2.85
TCF4-259	ENST00000627568	G2E3	Q7L622	706 aa		32.83	■■■□□ 2.85
TCF4-259	ENST00000627568	DBNDD1	Q9H9R9	158 aa		32.83	■■■□□ 2.85
TCF4-259	ENST00000627568	ANKIB1	Q9P2G1	1089 aa		32.83	■■■□□ 2.85
TCF4-259	ENST00000627568	CTSW	P56202	376 aa		32.82	■■■□□ 2.84
TCF4-259	ENST00000627568	FAM9B	Q8IZU0	186 aa		32.82	■■■□□ 2.84
TCF4-259	ENST00000627568	TBC1D16	Q8TBP0	767 aa		32.82	■■■□□ 2.84
TCF4-259	ENST00000627568	FLII	Q13045	1269 aa		32.81	■■■□□ 2.84
TCF4-259	ENST00000627568	CWF19L2	Q2TBE0	894 aa	Known RBP	32.81	■■■□□ 2.84
TCF4-259	ENST00000627568	ANKRD18A	Q8IVF6	992 aa		32.81	■■■□□ 2.84
TCF4-259	ENST00000627568	PODXL2	Q9NZ53	605 aa		32.81	■■■□□ 2.84
TCF4-259	ENST00000627568	NEURL1B	A8MQ27	555 aa		32.8	■■■□□ 2.84
TCF4-259	ENST00000627568	CDC5L	Q99459	802 aa	Known RBP	32.8	■■■□□ 2.84
TCF4-259	ENST00000627568	ECE2	O60344	883 aa		32.79	■■■□□ 2.84
TCF4-259	ENST00000627568	UFL1	O94874	794 aa		32.79	■■■□□ 2.84
TCF4-259	ENST00000627568	FKBP5	Q13451	457 aa	Predicted RBP	32.79	■■■□□ 2.84
TCF4-259	ENST00000627568	ZC3H12C	Q9C0D7	883 aa	Known RBP	32.79	■■■□□ 2.84
TCF4-259	ENST00000627568	GGA1	Q9UJY5	639 aa		32.79	■■■□□ 2.84
TCF4-259	ENST00000627568	ABT1	Q9ULW3	272 aa	Known RBP	32.79	■■■□□ 2.84

Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms