RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 FAM161AQ3B820 660 aa22.11■■□□□ 1.13
PTCHD3-202ENST00000622555 SLC10A5Q5PT55 438 aa22.11■■□□□ 1.13
PTCHD3-202ENST00000622555 PA2G4Q9UQ80 394 aaKnown RBP22.11■■□□□ 1.13
PTCHD3-202ENST00000622555 MMP10P09238 476 aa22.11■■□□□ 1.13
PTCHD3-202ENST00000622555 PRR5LQ6MZQ0 368 aa22.11■■□□□ 1.13
PTCHD3-202ENST00000622555 APBB1O00213 710 aa22.1■■□□□ 1.13
PTCHD3-202ENST00000622555 RFX5P48382 616 aaPredicted RBP22.1■■□□□ 1.13
PTCHD3-202ENST00000622555 CCDC57Q2TAC2 916 aa22.1■■□□□ 1.13
PTCHD3-202ENST00000622555 PARP3Q9Y6F1 533 aa22.1■■□□□ 1.13
PTCHD3-202ENST00000622555 NRXN2Q9P2S2 1712 aa22.09■■□□□ 1.13
PTCHD3-202ENST00000622555 ST5P78524 1137 aa22.09■■□□□ 1.13
PTCHD3-202ENST00000622555 KLHDC4Q8TBB5 520 aa22.09■■□□□ 1.13
PTCHD3-202ENST00000622555 GREM2Q9H772 168 aa22.09■■□□□ 1.13
PTCHD3-202ENST00000622555 PDZRN3Q9UPQ7 1066 aa22.09■■□□□ 1.13
PTCHD3-202ENST00000622555 IFIT5Q13325 482 aaKnown RBP22.09■■□□□ 1.13
PTCHD3-202ENST00000622555 CCDC152Q4G0S7 254 aa22.09■■□□□ 1.13
PTCHD3-202ENST00000622555 ANKRD45Q5TZF3 282 aa22.09■■□□□ 1.13
PTCHD3-202ENST00000622555 NOP58Q9Y2X3 529 aaKnown RBP22.09■■□□□ 1.13
PTCHD3-202ENST00000622555 TNRC6CQ9HCJ0 1690 aaKnown RBP22.08■■□□□ 1.13
PTCHD3-202ENST00000622555 PTPN12Q05209 780 aaKnown RBP22.08■■□□□ 1.12
PTCHD3-202ENST00000622555 OS9Q13438 667 aaPredicted RBP22.08■■□□□ 1.12
PTCHD3-202ENST00000622555 HSP90AB4PQ58FF6 505 aa22.08■■□□□ 1.12
PTCHD3-202ENST00000622555 C3orf67Q6ZVT6 689 aa22.08■■□□□ 1.12
PTCHD3-202ENST00000622555 SLC16A10Q8TF71 515 aa22.08■■□□□ 1.12
PTCHD3-202ENST00000622555 COPRSQ9NQ92 184 aa22.08■■□□□ 1.12
PTCHD3-202ENST00000622555 ITGA6P23229 1130 aa22.07■■□□□ 1.12
PTCHD3-202ENST00000622555 NUCB1Q02818 461 aa22.07■■□□□ 1.12
PTCHD3-202ENST00000622555 R3HDM1Q15032 1099 aaKnown RBP22.07■■□□□ 1.12
PTCHD3-202ENST00000622555 NLRP3Q96P20 1036 aa22.07■■□□□ 1.12
PTCHD3-202ENST00000622555 SIL1Q9H173 461 aa22.07■■□□□ 1.12
PTCHD3-202ENST00000622555 ZBTB47Q9UFB7 747 aaPredicted RBP22.07■■□□□ 1.12
PTCHD3-202ENST00000622555 ANKRD18BA2A2Z9 1011 aa22.06■■□□□ 1.12
PTCHD3-202ENST00000622555 G3BP1Q13283 466 aaKnown RBP eCLIP22.06■■□□□ 1.12
PTCHD3-202ENST00000622555 TAF7LQ5H9L4 462 aa22.06■■□□□ 1.12
PTCHD3-202ENST00000622555 RAB11FIP3O75154 756 aa22.06■■□□□ 1.12
PTCHD3-202ENST00000622555 SF3B3Q15393 1217 aaKnown RBP22.06■■□□□ 1.12
PTCHD3-202ENST00000622555 ZNF594Q96JF6 807 aaPredicted RBP22.06■■□□□ 1.12
PTCHD3-202ENST00000622555 RIC1Q4ADV7 1423 aa22.06■■□□□ 1.12
PTCHD3-202ENST00000622555 CHD1LQ86WJ1 897 aa22.05■■□□□ 1.12
PTCHD3-202ENST00000622555 SKAP1Q86WV1 359 aa22.05■■□□□ 1.12
PTCHD3-202ENST00000622555 RTL9Q8NET4 1388 aa22.04■■□□□ 1.12
PTCHD3-202ENST00000622555 LRRCC1Q9C099 1032 aa22.04■■□□□ 1.12
PTCHD3-202ENST00000622555 LNPKQ9C0E8 428 aa22.04■■□□□ 1.12
PTCHD3-202ENST00000622555 BCL11AQ9H165 835 aa22.04■■□□□ 1.12
PTCHD3-202ENST00000622555 SPEF2Q9C093 1822 aa22.04■■□□□ 1.12
PTCHD3-202ENST00000622555 ANKRD31Q8N7Z5 1873 aa22.03■■□□□ 1.12
PTCHD3-202ENST00000622555 SMARCA5O60264 1052 aaPredicted RBP22.03■■□□□ 1.12
PTCHD3-202ENST00000622555 ERC1Q8IUD2 1116 aa22.03■■□□□ 1.12
PTCHD3-202ENST00000622555 TAF1P21675 1872 aa22.03■■□□□ 1.12
PTCHD3-202ENST00000622555 SEC31BQ9NQW1 1179 aa22.03■■□□□ 1.12
PTCHD3-202ENST00000622555 RHPN1Q8TCX5 695 aa22.02■■□□□ 1.12
PTCHD3-202ENST00000622555 KIF1BPQ96EK5 621 aa22.02■■□□□ 1.12
PTCHD3-202ENST00000622555 PSDA5PKW4 1024 aaPredicted RBP22.01■■□□□ 1.11
PTCHD3-202ENST00000622555 ZBTB7AO95365 584 aa22.01■■□□□ 1.11
PTCHD3-202ENST00000622555 EYA2O00167 538 aa22■■□□□ 1.11
PTCHD3-202ENST00000622555 CIAO1O76071 339 aa22■■□□□ 1.11
PTCHD3-202ENST00000622555 RGS3P49796 1198 aa22■■□□□ 1.11
PTCHD3-202ENST00000622555 LRRC24Q50LG9 513 aa22■■□□□ 1.11
PTCHD3-202ENST00000622555 CDC5LQ99459 802 aaKnown RBP22■■□□□ 1.11
PTCHD3-202ENST00000622555 PUS3Q9BZE2 481 aaKnown RBP22■■□□□ 1.11
PTCHD3-202ENST00000622555 IL1RAPL2Q9NP60 686 aa22■■□□□ 1.11
PTCHD3-202ENST00000622555 LRP5O75197 1615 aa21.99■■□□□ 1.11
PTCHD3-202ENST00000622555 LDHAL6AQ6ZMR3 332 aa21.99■■□□□ 1.11
PTCHD3-202ENST00000622555 ATG9AQ7Z3C6 839 aa21.99■■□□□ 1.11
PTCHD3-202ENST00000622555 BRIP1Q9BX63 1249 aa21.99■■□□□ 1.11
PTCHD3-202ENST00000622555 MTFR1LQ9H019 292 aa21.99■■□□□ 1.11
PTCHD3-202ENST00000622555 FBXO3Q9UK99 471 aa21.99■■□□□ 1.11
PTCHD3-202ENST00000622555 SASH1O94885 1247 aa21.98■■□□□ 1.11
PTCHD3-202ENST00000622555 IGHMBP2P38935 993 aaKnown RBP21.98■■□□□ 1.11
PTCHD3-202ENST00000622555 IL15P40933 162 aaPredicted RBP21.98■■□□□ 1.11
PTCHD3-202ENST00000622555 DDX46Q7L014 1031 aaKnown RBP21.98■■□□□ 1.11
PTCHD3-202ENST00000622555 CNNM1Q9NRU3 951 aa21.98■■□□□ 1.11
PTCHD3-202ENST00000622555 COL4A1P02462 1669 aa21.98■■□□□ 1.11
PTCHD3-202ENST00000622555 PDE4AP27815 886 aa21.97■■□□□ 1.11
PTCHD3-202ENST00000622555 RPGRQ92834 1020 aaKnown RBP21.97■■□□□ 1.11
PTCHD3-202ENST00000622555 MPHOSPH8Q99549 860 aa21.97■■□□□ 1.11
PTCHD3-202ENST00000622555 ATF5Q9Y2D1 282 aaPredicted RBP21.97■■□□□ 1.11
PTCHD3-202ENST00000622555 CRY2Q49AN0 593 aa21.97■■□□□ 1.11
PTCHD3-202ENST00000622555 ANKRD18AQ8IVF6 992 aa21.97■■□□□ 1.11
PTCHD3-202ENST00000622555 TFCP2Q12800 502 aa21.96■■□□□ 1.11
PTCHD3-202ENST00000622555 KLRG2A4D1S0 409 aaPredicted RBP21.95■■□□□ 1.1
PTCHD3-202ENST00000622555 PDE6BP35913 854 aa21.95■■□□□ 1.1
PTCHD3-202ENST00000622555 C16orf71Q8IYS4 520 aaPredicted RBP21.95■■□□□ 1.1
PTCHD3-202ENST00000622555 CLASRPQ8N2M8 674 aaKnown RBP21.95■■□□□ 1.1
PTCHD3-202ENST00000622555 COL11A2P13942 1736 aaPredicted RBP21.95■■□□□ 1.1
PTCHD3-202ENST00000622555 CELF1Q92879 486 aaKnown RBP21.94■■□□□ 1.1
PTCHD3-202ENST00000622555 RBM17Q96I25 401 aaKnown RBP21.94■■□□□ 1.1
PTCHD3-202ENST00000622555 RIPOR2Q9Y4F9 1068 aa21.94■■□□□ 1.1
PTCHD3-202ENST00000622555 POLD1P28340 1107 aa21.94■■□□□ 1.1
PTCHD3-202ENST00000622555 CEP126Q9P2H0 1117 aa21.94■■□□□ 1.1
PTCHD3-202ENST00000622555 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.94■■□□□ 1.1
PTCHD3-202ENST00000622555 RPS8P62241 208 aaKnown RBP21.93■■□□□ 1.1
PTCHD3-202ENST00000622555 METTL24Q5JXM2 366 aa21.93■■□□□ 1.1
PTCHD3-202ENST00000622555 OTUD7AQ8TE49 926 aaPredicted RBP21.93■■□□□ 1.1
PTCHD3-202ENST00000622555 GRAPQ13588 217 aa21.92■■□□□ 1.1
PTCHD3-202ENST00000622555 AACSQ86V21 672 aa21.92■■□□□ 1.1
PTCHD3-202ENST00000622555 GRAPLQ8TC17 118 aaPredicted RBP21.92■■□□□ 1.1
PTCHD3-202ENST00000622555 BSDC1Q9NW68 430 aaPredicted RBP21.92■■□□□ 1.1
PTCHD3-202ENST00000622555 MROH5Q6ZUA9 1318 aa21.91■■□□□ 1.1
PTCHD3-202ENST00000622555 C10orf71Q711Q0 1435 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms