RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 PTPN21Q16825 1174 aa8.17□□□□□ -1.1
NEDD9-216ENST00000620854 FAM177A1Q8N128 213 aaPredicted RBP8.17□□□□□ -1.1
NEDD9-216ENST00000620854 GTF3C6Q969F1 213 aa8.17□□□□□ -1.1
NEDD9-216ENST00000620854 PGBD1Q96JS3 809 aa8.17□□□□□ -1.1
NEDD9-216ENST00000620854 ZSCAN31Q96LW9 406 aaPredicted RBP8.17□□□□□ -1.1
NEDD9-216ENST00000620854 DIP2BQ9P265 1576 aa8.17□□□□□ -1.1
NEDD9-216ENST00000620854 KMT5BQ4FZB7 885 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 C11orf57Q6ZUT1 292 aaPredicted RBP8.16□□□□□ -1.1
NEDD9-216ENST00000620854 FEZ1Q99689 392 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 ZSWIM6Q9HCJ5 1215 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 SH2B1Q9NRF2 756 aaPredicted RBP8.16□□□□□ -1.1
NEDD9-216ENST00000620854 ECHDC1Q9NTX5 307 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 DLG5Q8TDM6 1919 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 CPSF1Q10570 1443 aaKnown RBP8.16□□□□□ -1.1
NEDD9-216ENST00000620854 BIN1O00499 593 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 CCT2P78371 535 aaKnown RBP8.16□□□□□ -1.1
NEDD9-216ENST00000620854 BRF1Q92994 677 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 NEUROD6Q96NK8 337 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 SCAND2PQ9GZW5 306 aaPredicted RBP8.16□□□□□ -1.1
NEDD9-216ENST00000620854 LGR6Q9HBX8 967 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 A0A0D9SFI3 127 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 GCP02774 474 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 PLCD3Q8N3E9 789 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 DNAAF4Q8WXU2 420 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 CCDC34Q96HJ3 373 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 TMX1Q9H3N1 280 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 TLR7Q9NYK1 1049 aaKnown RBP8.16□□□□□ -1.1
NEDD9-216ENST00000620854 FLT4P35916 1363 aa8.16□□□□□ -1.1
NEDD9-216ENST00000620854 CRB1P82279 1406 aa8.15□□□□□ -1.1
NEDD9-216ENST00000620854 PLEKHG3A1L390 1219 aa8.15□□□□□ -1.1
NEDD9-216ENST00000620854 CCDC69A6NI79 296 aa8.15□□□□□ -1.1
NEDD9-216ENST00000620854 CCDC129Q6ZRS4 1044 aa8.15□□□□□ -1.1
NEDD9-216ENST00000620854 LRRC8AQ8IWT6 810 aa8.15□□□□□ -1.1
NEDD9-216ENST00000620854 TMX4Q9H1E5 349 aaPredicted RBP8.15□□□□□ -1.1
NEDD9-216ENST00000620854 CCDC171Q6TFL3 1326 aa8.15□□□□□ -1.1
NEDD9-216ENST00000620854 SLC27A2O14975 620 aa8.15□□□□□ -1.1
NEDD9-216ENST00000620854 POLR3GO15318 223 aaPredicted RBP8.15□□□□□ -1.1
NEDD9-216ENST00000620854 PDCP20941 246 aa8.15□□□□□ -1.1
NEDD9-216ENST00000620854 ERCC6LQ2NKX8 1250 aa8.15□□□□□ -1.1
NEDD9-216ENST00000620854 RNF20Q5VTR2 975 aa8.15□□□□□ -1.1
NEDD9-216ENST00000620854 CHST3Q7LGC8 479 aa8.15□□□□□ -1.1
NEDD9-216ENST00000620854 SDF4Q9BRK5 362 aa8.15□□□□□ -1.1
NEDD9-216ENST00000620854 NEURL4Q96JN8 1562 aa8.15□□□□□ -1.11
NEDD9-216ENST00000620854 ME1P48163 572 aa8.15□□□□□ -1.11
NEDD9-216ENST00000620854 NECTIN1Q15223 517 aa8.15□□□□□ -1.11
NEDD9-216ENST00000620854 FBXO38Q6PIJ6 1188 aa8.15□□□□□ -1.11
NEDD9-216ENST00000620854 ZNF589Q86UQ0 364 aaPredicted RBP8.15□□□□□ -1.11
NEDD9-216ENST00000620854 KIF18AQ8NI77 898 aa8.15□□□□□ -1.11
NEDD9-216ENST00000620854 CABLES1Q8TDN4 633 aa8.15□□□□□ -1.11
NEDD9-216ENST00000620854 NGLY1Q96IV0 654 aa8.15□□□□□ -1.11
NEDD9-216ENST00000620854 DDX41Q9UJV9 622 aaKnown RBP8.15□□□□□ -1.11
NEDD9-216ENST00000620854 A2ML1A8K2U0 1454 aa8.15□□□□□ -1.11
NEDD9-216ENST00000620854 CDK12Q9NYV4 1490 aaPredicted RBP8.15□□□□□ -1.11
NEDD9-216ENST00000620854 SMC2O95347 1197 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 SLFNL1Q499Z3 407 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 MPRIPQ6WCQ1 1025 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 NOC3LQ8WTT2 800 aaKnown RBP8.14□□□□□ -1.11
NEDD9-216ENST00000620854 DNAJC2Q99543 621 aaKnown RBP8.14□□□□□ -1.11
NEDD9-216ENST00000620854 PAXBP1Q9Y5B6 917 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 AATKQ6ZMQ8 1374 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 NPHP4O75161 1426 aaPredicted RBP8.14□□□□□ -1.11
NEDD9-216ENST00000620854 SSH2Q76I76 1423 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 SLFN14P0C7P3 912 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 CCDC73Q6ZRK6 1079 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 CCAR1Q8IX12 1150 aaKnown RBP8.14□□□□□ -1.11
NEDD9-216ENST00000620854 KRT222Q8N1A0 295 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 GOLGA6L1Q8N7Z2 621 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 EAF2Q96CJ1 260 aaPredicted RBP8.14□□□□□ -1.11
NEDD9-216ENST00000620854 ZFP91Q96JP5 570 aaPredicted RBP8.14□□□□□ -1.11
NEDD9-216ENST00000620854 SEC62Q99442 399 aaKnown RBP8.14□□□□□ -1.11
NEDD9-216ENST00000620854 CLSTN2Q9H4D0 955 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 PRAMEF22A3QJZ6 481 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 PSMA5P28066 241 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 RAB11FIP4Q86YS3 637 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 LMTK2Q8IWU2 1503 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 AOPEPQ8N6M6 819 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 DDX19AQ9NUU7 478 aaKnown RBP8.14□□□□□ -1.11
NEDD9-216ENST00000620854 MAP3K2Q9Y2U5 619 aa8.14□□□□□ -1.11
NEDD9-216ENST00000620854 HSP90AA4PQ58FG1 418 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 SYT10Q6XYQ8 523 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 PLA2G4DQ86XP0 818 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 LRRN4CLQ8ND94 238 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 LMTK3Q96Q04 1460 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 PIP4K2AP48426 406 aaPredicted RBP8.13□□□□□ -1.11
NEDD9-216ENST00000620854 OTUD7BQ6GQQ9 843 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 NCOA5Q9HCD5 579 aaKnown RBP8.13□□□□□ -1.11
NEDD9-216ENST00000620854 SIGLEC1Q9BZZ2 1709 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 REREQ9P2R6 1566 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 SETD1BQ9UPS6 1966 aaKnown RBP8.13□□□□□ -1.11
NEDD9-216ENST00000620854 ATP2B1P20020 1258 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 TERF2Q15554 542 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 PROSER3Q2NL68 480 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 HSP90AB4PQ58FF6 505 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 CPLX2Q6PUV4 134 aaKnown RBP8.13□□□□□ -1.11
NEDD9-216ENST00000620854 Q6ZUG5 572 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 EVI5LQ96CN4 794 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 ROBO2Q9HCK4 1378 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 A0A1B0GVL5 298 aa8.13□□□□□ -1.11
NEDD9-216ENST00000620854 KINO60870 393 aaKnown RBP8.13□□□□□ -1.11
NEDD9-216ENST00000620854 TOB2Q14106 344 aaPredicted RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms