RNA–Protein interactions for RNA: ENST00000618999.4

SRGAP3-213, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 5 BASIC

Gene SRGAP3, Length 3,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-213ENST00000618999 BEND3Q5T5X7 828 aa8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 BARGINQ6ZT62 677 aa8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 FAM184AQ8NB25 1140 aa8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 ATG3Q9NT62 314 aa8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 GOLGA6L6A8MZA4 724 aa8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 ATP5J2-PTCD1G3V325 749 aa8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 NBPF7P0C2Y1 421 aaPredicted RBP8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 OS9Q13438 667 aaPredicted RBP8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 PDIA6Q15084 440 aa8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 HDAC5Q9UQL6 1122 aa8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 WDR33Q9C0J8 1336 aaKnown RBP8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 PKP1Q13835 747 aa8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 MARCH10Q8NA82 808 aaPredicted RBP8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 LINS1Q8NG48 757 aa8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 TMX3Q96JJ7 454 aa8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 TEX13AQ9BXU3 409 aaPredicted RBP8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 ZBTB3Q9H5J0 574 aa8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 EXOC6BQ9Y2D4 811 aa8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 COL16A1Q07092 1604 aaPredicted RBP8.35□□□□□ -1.07
SRGAP3-213ENST00000618999 LRRC37A3O60309 1634 aa8.34□□□□□ -1.07
SRGAP3-213ENST00000618999 COL14A1Q05707 1796 aaKnown RBP8.34□□□□□ -1.07
SRGAP3-213ENST00000618999 SRGAP3O43295 1099 aa8.34□□□□□ -1.07
SRGAP3-213ENST00000618999 ALDH1L1O75891 902 aa8.34□□□□□ -1.07
SRGAP3-213ENST00000618999 VPS72Q15906 364 aa8.34□□□□□ -1.07
SRGAP3-213ENST00000618999 JARID2Q92833 1246 aaPredicted RBP8.34□□□□□ -1.07
SRGAP3-213ENST00000618999 LETM1O95202 739 aaPredicted RBP8.34□□□□□ -1.07
SRGAP3-213ENST00000618999 MPNDQ8N594 471 aa8.34□□□□□ -1.07
SRGAP3-213ENST00000618999 SURF6O75683 361 aaKnown RBP8.34□□□□□ -1.08
SRGAP3-213ENST00000618999 PPP1R37O75864 691 aa8.34□□□□□ -1.08
SRGAP3-213ENST00000618999 FAM182BQ5T319 152 aa8.34□□□□□ -1.08
SRGAP3-213ENST00000618999 TMEM63CQ9P1W3 806 aa8.34□□□□□ -1.08
SRGAP3-213ENST00000618999 ADCY9O60503 1353 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 AFF2P51816 1311 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 GOLGA6L4A6NEF3 574 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 NBPF26B4DH59 902 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 ATP8B2P98198 1209 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 NBPF14Q5TI25 921 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 NBPF10Q6P3W6 841 aaKnown RBP8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 TTLL7Q6ZT98 887 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 PPP1R42Q7Z4L9 355 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 NBPF15Q8N660 670 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 OTUD7AQ8TE49 926 aaPredicted RBP8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 POLR3EQ9NVU0 708 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 ABCA3Q99758 1704 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 PNMA6EA0A0J9YXQ4 647 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 GRXCR2A6NFK2 248 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 GRM8O00222 908 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 DRC7Q8IY82 874 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 FNBP4Q8N3X1 1017 aaPredicted RBP8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 GPT2Q8TD30 523 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 METTL22Q9BUU2 404 aaPredicted RBP8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 LRRCC1Q9C099 1032 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 ATP6V1AP38606 617 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 KIF6Q6ZMV9 814 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 CHMP3Q9Y3E7 222 aa8.33□□□□□ -1.08
SRGAP3-213ENST00000618999 KCNQ2O43526 872 aa8.32□□□□□ -1.08
SRGAP3-213ENST00000618999 PLBD2Q8NHP8 589 aa8.32□□□□□ -1.08
SRGAP3-213ENST00000618999 DIAPH3Q9NSV4 1193 aa8.32□□□□□ -1.08
SRGAP3-213ENST00000618999 A0A087WZG4 1122 aa8.32□□□□□ -1.08
SRGAP3-213ENST00000618999 KCNJ4P48050 445 aa8.32□□□□□ -1.08
SRGAP3-213ENST00000618999 UPF3BQ9BZI7 483 aaKnown RBP8.32□□□□□ -1.08
SRGAP3-213ENST00000618999 PCDHB8Q9UN66 801 aa8.32□□□□□ -1.08
SRGAP3-213ENST00000618999 SMC3Q9UQE7 1217 aa8.32□□□□□ -1.08
SRGAP3-213ENST00000618999 PCDHB13Q9Y5F0 798 aa8.32□□□□□ -1.08
SRGAP3-213ENST00000618999 IRF5Q13568 498 aa8.32□□□□□ -1.08
SRGAP3-213ENST00000618999 PDLIM2Q96JY6 352 aa8.32□□□□□ -1.08
SRGAP3-213ENST00000618999 GDPD2Q9HCC8 539 aa8.32□□□□□ -1.08
SRGAP3-213ENST00000618999 USP25Q9UHP3 1055 aa8.32□□□□□ -1.08
SRGAP3-213ENST00000618999 DISP2A7MBM2 1401 aa8.32□□□□□ -1.08
SRGAP3-213ENST00000618999 PARP4Q9UKK3 1724 aaKnown RBP8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 PDE1AP54750 535 aa8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 CCDC183Q5T5S1 534 aa8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 UBE3BQ7Z3V4 1068 aa8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 GJD4Q96KN9 370 aaPredicted RBP8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 PRIMPOLQ96LW4 560 aa8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 QTRT2Q9H974 415 aaKnown RBP8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 NEURL1BA8MQ27 555 aa8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 IGKV5-2P06315 115 aa8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 TPM3P06753 285 aa8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 MX1P20591 662 aa8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 UVSSAQ2YD98 709 aa8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 TRPC5Q9UL62 973 aaPredicted RBP8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 KIF3AQ9Y496 699 aa8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 SLIT2O94813 1529 aa8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 TNS2Q63HR2 1409 aa8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 FIBPO43427 364 aa8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 GCKRQ14397 625 aa8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 IL1RAPL2Q9NP60 686 aa8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.31□□□□□ -1.08
SRGAP3-213ENST00000618999 COL22A1Q8NFW1 1626 aaPredicted RBP8.3□□□□□ -1.08
SRGAP3-213ENST00000618999 CYP2E1P05181 493 aaPredicted RBP8.3□□□□□ -1.08
SRGAP3-213ENST00000618999 ANAPC15P60006 121 aa8.3□□□□□ -1.08
SRGAP3-213ENST00000618999 INTS4Q96HW7 963 aaKnown RBP8.3□□□□□ -1.08
SRGAP3-213ENST00000618999 ESYT1Q9BSJ8 1104 aa8.3□□□□□ -1.08
SRGAP3-213ENST00000618999 TBC1D2BQ9UPU7 963 aa8.3□□□□□ -1.08
SRGAP3-213ENST00000618999 SCN11AQ9UI33 1791 aa8.3□□□□□ -1.08
SRGAP3-213ENST00000618999 KDM3BQ7LBC6 1761 aa8.3□□□□□ -1.08
SRGAP3-213ENST00000618999 LOC102724428A0A0B4J2F2 783 aa8.3□□□□□ -1.08
SRGAP3-213ENST00000618999 SIK1P57059 783 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms