RNA–Protein interactions for RNA: ENST00000616010.4

CCND3-223, Transcript of cyclin D3, human

TSL 5 BASIC

Gene CCND3, Length 2,047 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCND3-223	ENST00000616010	PTPN12	Q05209	780 aa	Known RBP	29.01	■■■□□ 2.24
CCND3-223	ENST00000616010	SLC15A2	Q16348	729 aa		29.01	■■■□□ 2.24
CCND3-223	ENST00000616010	ERFE	Q4G0M1	354 aa		29.01	■■■□□ 2.24
CCND3-223	ENST00000616010	TTLL11	Q8NHH1	800 aa		29.01	■■■□□ 2.24
CCND3-223	ENST00000616010	COPRS	Q9NQ92	184 aa		29.01	■■■□□ 2.23
CCND3-223	ENST00000616010	QSER1	Q2KHR3	1735 aa		29	■■■□□ 2.23
CCND3-223	ENST00000616010	GTF2E1	P29083	439 aa	Predicted RBP	29	■■■□□ 2.23
CCND3-223	ENST00000616010	ABCC12	Q96J65	1359 aa		29	■■■□□ 2.23
CCND3-223	ENST00000616010	CASZ1	Q86V15	1759 aa		29	■■■□□ 2.23
CCND3-223	ENST00000616010	HSP90B1	P14625	803 aa	Known RBP	28.99	■■■□□ 2.23
CCND3-223	ENST00000616010	CCDC57	Q2TAC2	916 aa		28.99	■■■□□ 2.23
CCND3-223	ENST00000616010	RHPN1	Q8TCX5	695 aa		28.99	■■■□□ 2.23
CCND3-223	ENST00000616010	KIF1BP	Q96EK5	621 aa		28.99	■■■□□ 2.23
CCND3-223	ENST00000616010	GREM2	Q9H772	168 aa		28.99	■■■□□ 2.23
CCND3-223	ENST00000616010	G3BP1	Q13283	466 aa	Known RBP eCLIP	28.98	■■■□□ 2.23
CCND3-223	ENST00000616010	TPTE2	Q6XPS3	522 aa		28.98	■■■□□ 2.23
CCND3-223	ENST00000616010	IFIT5	Q13325	482 aa	Known RBP	28.97	■■■□□ 2.23
CCND3-223	ENST00000616010	ERC1	Q8IUD2	1116 aa		28.97	■■■□□ 2.23
CCND3-223	ENST00000616010	IL1RAPL2	Q9NP60	686 aa		28.97	■■■□□ 2.23
CCND3-223	ENST00000616010	NPHP1	O15259	732 aa		28.96	■■■□□ 2.23
CCND3-223	ENST00000616010	ZNF594	Q96JF6	807 aa	Predicted RBP	28.96	■■■□□ 2.23
CCND3-223	ENST00000616010	ITGA6	P23229	1130 aa		28.96	■■■□□ 2.23
CCND3-223	ENST00000616010	C16orf71	Q8IYS4	520 aa	Predicted RBP	28.96	■■■□□ 2.23
CCND3-223	ENST00000616010	TM4SF1	P30408	202 aa		28.94	■■■□□ 2.22
CCND3-223	ENST00000616010	CCDC24	Q8N4L8	307 aa		28.94	■■■□□ 2.22
CCND3-223	ENST00000616010	CNBD1	Q8NA66	436 aa		28.94	■■■□□ 2.22
CCND3-223	ENST00000616010	OTUD7A	Q8TE49	926 aa	Predicted RBP	28.94	■■■□□ 2.22
CCND3-223	ENST00000616010	TAF7L	Q5H9L4	462 aa		28.93	■■■□□ 2.22
CCND3-223	ENST00000616010	ANKRD18B	A2A2Z9	1011 aa		28.93	■■■□□ 2.22
CCND3-223	ENST00000616010	SASH1	O94885	1247 aa		28.93	■■■□□ 2.22
CCND3-223	ENST00000616010	CCDC152	Q4G0S7	254 aa		28.93	■■■□□ 2.22
CCND3-223	ENST00000616010	TNRC6C	Q9HCJ0	1690 aa	Known RBP	28.92	■■■□□ 2.22
CCND3-223	ENST00000616010	DDR1	Q08345	913 aa		28.92	■■■□□ 2.22
CCND3-223	ENST00000616010	SLC10A5	Q5PT55	438 aa		28.92	■■■□□ 2.22
CCND3-223	ENST00000616010	NLGN1	Q8N2Q7	840 aa		28.92	■■■□□ 2.22
CCND3-223	ENST00000616010	C3orf67	Q6ZVT6	689 aa		28.91	■■■□□ 2.22
CCND3-223	ENST00000616010	SERPINB2	P05120	415 aa		28.91	■■■□□ 2.22
CCND3-223	ENST00000616010	POLRMT	O00411	1230 aa	Known RBP	28.9	■■■□□ 2.22
CCND3-223	ENST00000616010	LRP5	O75197	1615 aa		28.9	■■■□□ 2.22
CCND3-223	ENST00000616010	PLEKHM2	Q8IWE5	1019 aa		28.9	■■■□□ 2.22
CCND3-223	ENST00000616010	EYA2	O00167	538 aa		28.89	■■■□□ 2.22
CCND3-223	ENST00000616010	PRR5L	Q6MZQ0	368 aa		28.89	■■■□□ 2.22
CCND3-223	ENST00000616010	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	28.89	■■■□□ 2.22
CCND3-223	ENST00000616010	RTL9	Q8NET4	1388 aa		28.89	■■■□□ 2.22
CCND3-223	ENST00000616010	LRRC24	Q50LG9	513 aa		28.89	■■■□□ 2.21
CCND3-223	ENST00000616010	MSL1	Q68DK7	614 aa		28.89	■■■□□ 2.21
CCND3-223	ENST00000616010	ATG9A	Q7Z3C6	839 aa		28.88	■■■□□ 2.21
CCND3-223	ENST00000616010	CLASRP	Q8N2M8	674 aa	Known RBP	28.88	■■■□□ 2.21
CCND3-223	ENST00000616010	PUS3	Q9BZE2	481 aa	Known RBP	28.88	■■■□□ 2.21
CCND3-223	ENST00000616010	CIAO1	O76071	339 aa		28.87	■■■□□ 2.21
CCND3-223	ENST00000616010	SPEF2	Q9C093	1822 aa		28.87	■■■□□ 2.21
CCND3-223	ENST00000616010	IL15	P40933	162 aa	Predicted RBP	28.87	■■■□□ 2.21
CCND3-223	ENST00000616010	SF3B3	Q15393	1217 aa	Known RBP	28.87	■■■□□ 2.21
CCND3-223	ENST00000616010	UPF1	Q92900	1129 aa	Known RBP eCLIP	28.87	■■■□□ 2.21	7e-15	■■□□□ 14
CCND3-223	ENST00000616010	NLRP3	Q96P20	1036 aa		28.87	■■■□□ 2.21
CCND3-223	ENST00000616010	SEC31B	Q9NQW1	1179 aa		28.87	■■■□□ 2.21
CCND3-223	ENST00000616010	TFCP2	Q12800	502 aa		28.86	■■■□□ 2.21
CCND3-223	ENST00000616010	SALL3	Q9BXA9	1300 aa		28.86	■■■□□ 2.21
CCND3-223	ENST00000616010	ST5	P78524	1137 aa		28.86	■■■□□ 2.21
CCND3-223	ENST00000616010	FBXO3	Q9UK99	471 aa		28.86	■■■□□ 2.21
CCND3-223	ENST00000616010	NRXN2	Q9P2S2	1712 aa		28.85	■■■□□ 2.21
CCND3-223	ENST00000616010	RIC1	Q4ADV7	1423 aa		28.84	■■■□□ 2.21
CCND3-223	ENST00000616010	MMP10	P09238	476 aa		28.84	■■■□□ 2.21
CCND3-223	ENST00000616010	MX1	P20591	662 aa		28.84	■■■□□ 2.21
CCND3-223	ENST00000616010	LDHAL6A	Q6ZMR3	332 aa		28.84	■■■□□ 2.21
CCND3-223	ENST00000616010	COL4A1	P02462	1669 aa		28.84	■■■□□ 2.21
CCND3-223	ENST00000616010	AACS	Q86V21	672 aa		28.84	■■■□□ 2.21
CCND3-223	ENST00000616010	PDE1A	P54750	535 aa		28.82	■■■□□ 2.2
CCND3-223	ENST00000616010	TSHZ3	Q63HK5	1081 aa		28.82	■■■□□ 2.2
CCND3-223	ENST00000616010	PDGFD	Q9GZP0	370 aa	Predicted RBP	28.82	■■■□□ 2.2
CCND3-223	ENST00000616010	CNNM1	Q9NRU3	951 aa		28.82	■■■□□ 2.2
CCND3-223	ENST00000616010	TAF1	P21675	1872 aa		28.82	■■■□□ 2.2
CCND3-223	ENST00000616010	EAF2	Q96CJ1	260 aa	Predicted RBP	28.82	■■■□□ 2.2
CCND3-223	ENST00000616010	IFIT2	P09913	472 aa	Known RBP	28.81	■■■□□ 2.2
CCND3-223	ENST00000616010	CDC5L	Q99459	802 aa	Known RBP	28.81	■■■□□ 2.2
CCND3-223	ENST00000616010	PARP3	Q9Y6F1	533 aa		28.81	■■■□□ 2.2
CCND3-223	ENST00000616010	IGHMBP2	P38935	993 aa	Known RBP	28.8	■■■□□ 2.2
CCND3-223	ENST00000616010	TNNI3K	Q59H18	835 aa		28.8	■■■□□ 2.2
CCND3-223	ENST00000616010	RIPOR2	Q9Y4F9	1068 aa		28.8	■■■□□ 2.2
CCND3-223	ENST00000616010	FPGT-TNNI3K	V9GXZ4	949 aa		28.8	■■■□□ 2.2
CCND3-223	ENST00000616010	MPHOSPH8	Q99549	860 aa		28.79	■■■□□ 2.2
CCND3-223	ENST00000616010	OSBPL3	Q9H4L5	887 aa		28.79	■■■□□ 2.2
CCND3-223	ENST00000616010	TTC22	Q5TAA0	569 aa		28.79	■■■□□ 2.2
CCND3-223	ENST00000616010	CEP126	Q9P2H0	1117 aa		28.79	■■■□□ 2.2
CCND3-223	ENST00000616010	BMP2KL	Q5H9B9	411 aa		28.78	■■■□□ 2.2
CCND3-223	ENST00000616010	CCDC8	Q9H0W5	538 aa	Predicted RBP	28.78	■■■□□ 2.2
CCND3-223	ENST00000616010	TLR7	Q9NYK1	1049 aa	Known RBP	28.78	■■■□□ 2.2
CCND3-223	ENST00000616010	ZNF609	O15014	1411 aa		28.78	■■■□□ 2.2
CCND3-223	ENST00000616010	ANKRD31	Q8N7Z5	1873 aa		28.78	■■■□□ 2.2
CCND3-223	ENST00000616010	GSPT1	P15170	499 aa	Known RBP	28.77	■■■□□ 2.2
CCND3-223	ENST00000616010	METTL24	Q5JXM2	366 aa		28.77	■■■□□ 2.2
CCND3-223	ENST00000616010	STAP2	Q9UGK3	403 aa		28.77	■■■□□ 2.2
CCND3-223	ENST00000616010	ANKRD18A	Q8IVF6	992 aa		28.76	■■■□□ 2.19
CCND3-223	ENST00000616010	CELF1	Q92879	486 aa	Known RBP	28.76	■■■□□ 2.19
CCND3-223	ENST00000616010	DDX46	Q7L014	1031 aa	Known RBP	28.75	■■■□□ 2.19
CCND3-223	ENST00000616010	GPR108	Q9NPR9	543 aa		28.75	■■■□□ 2.19
CCND3-223	ENST00000616010	AOX1	Q06278	1338 aa		28.75	■■■□□ 2.19
CCND3-223	ENST00000616010	GPATCH3	Q96I76	525 aa		28.74	■■■□□ 2.19
CCND3-223	ENST00000616010	MROH5	Q6ZUA9	1318 aa		28.74	■■■□□ 2.19
CCND3-223	ENST00000616010	DBNL	Q9UJU6	430 aa	Known RBP	28.74	■■■□□ 2.19

Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms