RNA–Protein interactions for RNA: ENST00000615442.1

PVT1-223, Transcript of Pvt1 oncogene, human

Gene PVT1, Length 165 nt, Biotype misc RNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-223	ENST00000615442	DALRD3	Q5D0E6	543 aa	Known RBP	13.19	□□□□□ -0.3
PVT1-223	ENST00000615442	TTLL6	Q8N841	843 aa		13.19	□□□□□ -0.3
PVT1-223	ENST00000615442	KAZALD1	Q96I82	304 aa		13.19	□□□□□ -0.3
PVT1-223	ENST00000615442	SUCLG2	Q96I99	432 aa		13.19	□□□□□ -0.3
PVT1-223	ENST00000615442	MEIS3	Q99687	375 aa		13.19	□□□□□ -0.3
PVT1-223	ENST00000615442	DDX19B	Q9UMR2	479 aa		13.19	□□□□□ -0.3
PVT1-223	ENST00000615442	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.19	□□□□□ -0.3
PVT1-223	ENST00000615442	BBOX1	O75936	387 aa		13.18	□□□□□ -0.3
PVT1-223	ENST00000615442	RABL6	Q3YEC7	729 aa	Predicted RBP	13.18	□□□□□ -0.3
PVT1-223	ENST00000615442	EPHA10	Q5JZY3	1008 aa		13.18	□□□□□ -0.3
PVT1-223	ENST00000615442	C20orf194	Q5TEA3	1177 aa		13.18	□□□□□ -0.3
PVT1-223	ENST00000615442	COG6	Q9Y2V7	657 aa		13.18	□□□□□ -0.3
PVT1-223	ENST00000615442	RTL9	Q8NET4	1388 aa		13.18	□□□□□ -0.3
PVT1-223	ENST00000615442	GNAI2	P04899	355 aa		13.17	□□□□□ -0.3
PVT1-223	ENST00000615442	CENPB	P07199	599 aa	Predicted RBP	13.17	□□□□□ -0.3
PVT1-223	ENST00000615442	GRAP	Q13588	217 aa		13.17	□□□□□ -0.3
PVT1-223	ENST00000615442	LMBR1L	Q6UX01	489 aa		13.17	□□□□□ -0.3
PVT1-223	ENST00000615442	GRAPL	Q8TC17	118 aa	Predicted RBP	13.17	□□□□□ -0.3
PVT1-223	ENST00000615442	ANKRD31	Q8N7Z5	1873 aa		13.16	□□□□□ -0.3
PVT1-223	ENST00000615442	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.16	□□□□□ -0.3
PVT1-223	ENST00000615442	RPS8	P62241	208 aa	Known RBP	13.16	□□□□□ -0.3
PVT1-223	ENST00000615442	TMC4	Q7Z404	712 aa		13.16	□□□□□ -0.3
PVT1-223	ENST00000615442	ANKRD44	Q8N8A2	993 aa		13.16	□□□□□ -0.3
PVT1-223	ENST00000615442	BICC1	Q9H694	974 aa	Known RBP	13.16	□□□□□ -0.3
PVT1-223	ENST00000615442	GREM2	Q9H772	168 aa		13.16	□□□□□ -0.3
PVT1-223	ENST00000615442	LRRFIP2	Q9Y608	721 aa	Known RBP	13.16	□□□□□ -0.3
PVT1-223	ENST00000615442	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.15	□□□□□ -0.3
PVT1-223	ENST00000615442	ANKRD18B	A2A2Z9	1011 aa		13.15	□□□□□ -0.3
PVT1-223	ENST00000615442	IFIT5	Q13325	482 aa	Known RBP	13.15	□□□□□ -0.3
PVT1-223	ENST00000615442	CCDC57	Q2TAC2	916 aa		13.15	□□□□□ -0.3
PVT1-223	ENST00000615442	PRPF40B	Q6NWY9	871 aa	Known RBP	13.15	□□□□□ -0.3
PVT1-223	ENST00000615442	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.15	□□□□□ -0.3
PVT1-223	ENST00000615442	CDC5L	Q99459	802 aa	Known RBP	13.15	□□□□□ -0.3
PVT1-223	ENST00000615442	SEC31B	Q9NQW1	1179 aa		13.15	□□□□□ -0.3
PVT1-223	ENST00000615442	ZBTB40	Q9NUA8	1239 aa		13.15	□□□□□ -0.3
PVT1-223	ENST00000615442	BCS1L	Q9Y276	419 aa		13.15	□□□□□ -0.3
PVT1-223	ENST00000615442	DDX60	Q8IY21	1712 aa	Known RBP	13.15	□□□□□ -0.3
PVT1-223	ENST00000615442	KIAA1551	Q9HCM1	1747 aa		13.15	□□□□□ -0.3
PVT1-223	ENST00000615442	DCAF8L1	A6NGE4	600 aa		13.14	□□□□□ -0.31
PVT1-223	ENST00000615442	ITGA6	P23229	1130 aa		13.14	□□□□□ -0.31
PVT1-223	ENST00000615442	GPR162	Q16538	588 aa		13.14	□□□□□ -0.31
PVT1-223	ENST00000615442	FAM161A	Q3B820	660 aa		13.14	□□□□□ -0.31
PVT1-223	ENST00000615442	GRIPAP1	Q4V328	841 aa		13.14	□□□□□ -0.31
PVT1-223	ENST00000615442	SOGA3	Q5TF21	947 aa		13.14	□□□□□ -0.31
PVT1-223	ENST00000615442	CC2D2B	Q6DHV5	1058 aa		13.14	□□□□□ -0.31
PVT1-223	ENST00000615442	ANKRD18A	Q8IVF6	992 aa		13.14	□□□□□ -0.31
PVT1-223	ENST00000615442	SP8	Q8IXZ3	490 aa		13.14	□□□□□ -0.31
PVT1-223	ENST00000615442	C7orf43	Q8WVR3	580 aa		13.14	□□□□□ -0.31
PVT1-223	ENST00000615442	CELF1	Q92879	486 aa	Known RBP	13.14	□□□□□ -0.31
PVT1-223	ENST00000615442	CHMP3	Q9Y3E7	222 aa		13.14	□□□□□ -0.31
PVT1-223	ENST00000615442	ATP6V0A2	Q9Y487	856 aa		13.14	□□□□□ -0.31
PVT1-223	ENST00000615442	LAMB2	P55268	1798 aa		13.13	□□□□□ -0.31
PVT1-223	ENST00000615442	PPEF1	O14829	653 aa	Predicted RBP	13.13	□□□□□ -0.31
PVT1-223	ENST00000615442	GRIN3B	O60391	1043 aa		13.13	□□□□□ -0.31
PVT1-223	ENST00000615442	MTX1	Q13505	466 aa		13.13	□□□□□ -0.31
PVT1-223	ENST00000615442	TMX4	Q9H1E5	349 aa	Predicted RBP	13.13	□□□□□ -0.31
PVT1-223	ENST00000615442	WWC3	Q9ULE0	1092 aa		13.13	□□□□□ -0.31
PVT1-223	ENST00000615442	C21orf2	O43822	256 aa		13.12	□□□□□ -0.31
PVT1-223	ENST00000615442	YBX3	P16989	372 aa	Known RBP eCLIP	13.12	□□□□□ -0.31
PVT1-223	ENST00000615442	IGHMBP2	P38935	993 aa	Known RBP	13.12	□□□□□ -0.31
PVT1-223	ENST00000615442	ATP8B2	P98198	1209 aa		13.12	□□□□□ -0.31
PVT1-223	ENST00000615442	AAMP	Q13685	434 aa		13.12	□□□□□ -0.31
PVT1-223	ENST00000615442	PELP1	Q8IZL8	1130 aa	Known RBP	13.12	□□□□□ -0.31
PVT1-223	ENST00000615442	BSDC1	Q9NW68	430 aa	Predicted RBP	13.12	□□□□□ -0.31
PVT1-223	ENST00000615442	COL11A2	P13942	1736 aa	Predicted RBP	13.11	□□□□□ -0.31
PVT1-223	ENST00000615442	TAF7L	Q5H9L4	462 aa		13.11	□□□□□ -0.31
PVT1-223	ENST00000615442	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.11	□□□□□ -0.31
PVT1-223	ENST00000615442	RTKN2	Q8IZC4	609 aa		13.11	□□□□□ -0.31
PVT1-223	ENST00000615442	MPHOSPH8	Q99549	860 aa		13.11	□□□□□ -0.31
PVT1-223	ENST00000615442	DLEC1	Q9Y238	1755 aa		13.11	□□□□□ -0.31
PVT1-223	ENST00000615442	SRGAP3	O43295	1099 aa		13.1	□□□□□ -0.31
PVT1-223	ENST00000615442	RFX5	P48382	616 aa	Predicted RBP	13.1	□□□□□ -0.31
PVT1-223	ENST00000615442	CCDC93	Q567U6	631 aa		13.1	□□□□□ -0.31
PVT1-223	ENST00000615442	CRBN	Q96SW2	442 aa		13.1	□□□□□ -0.31
PVT1-223	ENST00000615442	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.1	□□□□□ -0.31
PVT1-223	ENST00000615442	LDHAL6A	Q6ZMR3	332 aa		13.09	□□□□□ -0.31
PVT1-223	ENST00000615442	ARHGAP27	Q6ZUM4	889 aa		13.09	□□□□□ -0.31
PVT1-223	ENST00000615442	ZNF594	Q96JF6	807 aa	Predicted RBP	13.09	□□□□□ -0.31
PVT1-223	ENST00000615442	C1orf115	Q9H7X2	142 aa		13.09	□□□□□ -0.31
PVT1-223	ENST00000615442	COPRS	Q9NQ92	184 aa		13.09	□□□□□ -0.31
PVT1-223	ENST00000615442	FBXO3	Q9UK99	471 aa		13.09	□□□□□ -0.31
PVT1-223	ENST00000615442	MINPP1	Q9UNW1	487 aa		13.09	□□□□□ -0.31
PVT1-223	ENST00000615442	PTPN12	Q05209	780 aa	Known RBP	13.08	□□□□□ -0.32
PVT1-223	ENST00000615442	POLA2	Q14181	598 aa		13.08	□□□□□ -0.32
PVT1-223	ENST00000615442	CEP85	Q6P2H3	762 aa		13.08	□□□□□ -0.32
PVT1-223	ENST00000615442	MPND	Q8N594	471 aa		13.08	□□□□□ -0.32
PVT1-223	ENST00000615442	SSH3	Q8TE77	659 aa		13.08	□□□□□ -0.32
PVT1-223	ENST00000615442	ANKRD2	Q9GZV1	360 aa		13.08	□□□□□ -0.32
PVT1-223	ENST00000615442	PNMA6E	A0A0J9YXQ4	647 aa		13.07	□□□□□ -0.32
PVT1-223	ENST00000615442	CIAO1	O76071	339 aa		13.07	□□□□□ -0.32
PVT1-223	ENST00000615442	OLFM4	Q6UX06	510 aa		13.07	□□□□□ -0.32
PVT1-223	ENST00000615442	DPP8	Q6V1X1	898 aa	Predicted RBP	13.07	□□□□□ -0.32
PVT1-223	ENST00000615442	SUPT20H	Q8NEM7	779 aa		13.07	□□□□□ -0.32
PVT1-223	ENST00000615442	PSMD1	Q99460	953 aa		13.07	□□□□□ -0.32
PVT1-223	ENST00000615442	CNNM1	Q9NRU3	951 aa		13.07	□□□□□ -0.32
PVT1-223	ENST00000615442	PODXL2	Q9NZ53	605 aa		13.07	□□□□□ -0.32
PVT1-223	ENST00000615442	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.07	□□□□□ -0.32
PVT1-223	ENST00000615442	RIPOR2	Q9Y4F9	1068 aa		13.07	□□□□□ -0.32
PVT1-223	ENST00000615442	BRCA1	P38398	1863 aa	Known RBP	13.07	□□□□□ -0.32
PVT1-223	ENST00000615442	LTBP3	Q9NS15	1303 aa		13.07	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms