RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 EZH2Q15910 746 aaKnown RBP14.34□□□□□ -0.11
VRK3-223ENST00000601341 ZNF827Q17R98 1081 aa14.34□□□□□ -0.11
VRK3-223ENST00000601341 CCDC125Q86Z20 511 aa14.34□□□□□ -0.11
VRK3-223ENST00000601341 ERC1Q8IUD2 1116 aa14.34□□□□□ -0.11
VRK3-223ENST00000601341 KIF1BPQ96EK5 621 aa14.34□□□□□ -0.11
VRK3-223ENST00000601341 NYXQ9GZU5 481 aa14.34□□□□□ -0.11
VRK3-223ENST00000601341 PA2G4Q9UQ80 394 aaKnown RBP14.34□□□□□ -0.11
VRK3-223ENST00000601341 RFX5P48382 616 aaPredicted RBP14.34□□□□□ -0.11
VRK3-223ENST00000601341 CTSWP56202 376 aa14.34□□□□□ -0.11
VRK3-223ENST00000601341 UBR3Q6ZT12 1888 aa14.33□□□□□ -0.12
VRK3-223ENST00000601341 SMARCA5O60264 1052 aaPredicted RBP14.33□□□□□ -0.12
VRK3-223ENST00000601341 GYS1P13807 737 aa14.33□□□□□ -0.12
VRK3-223ENST00000601341 GTF2E1P29083 439 aaPredicted RBP14.33□□□□□ -0.12
VRK3-223ENST00000601341 PTPN12Q05209 780 aaKnown RBP14.33□□□□□ -0.12
VRK3-223ENST00000601341 CCDC57Q2TAC2 916 aa14.33□□□□□ -0.12
VRK3-223ENST00000601341 TPTE2Q6XPS3 522 aa14.33□□□□□ -0.12
VRK3-223ENST00000601341 TTLL11Q8NHH1 800 aa14.33□□□□□ -0.12
VRK3-223ENST00000601341 RHPN1Q8TCX5 695 aa14.33□□□□□ -0.12
VRK3-223ENST00000601341 TBC1D2Q9BYX2 928 aa14.33□□□□□ -0.12
VRK3-223ENST00000601341 NBPF5PQ86XG9 351 aaPredicted RBP14.32□□□□□ -0.12
VRK3-223ENST00000601341 HCLS1P14317 486 aaPredicted RBP14.32□□□□□ -0.12
VRK3-223ENST00000601341 IFIT5Q13325 482 aaKnown RBP14.32□□□□□ -0.12
VRK3-223ENST00000601341 NUTM1Q86Y26 1132 aa14.32□□□□□ -0.12
VRK3-223ENST00000601341 KLHDC4Q8TBB5 520 aa14.32□□□□□ -0.12
VRK3-223ENST00000601341 SNX21Q969T3 373 aa14.32□□□□□ -0.12
VRK3-223ENST00000601341 SIL1Q9H173 461 aa14.32□□□□□ -0.12
VRK3-223ENST00000601341 NFIXQ14938 502 aa14.31□□□□□ -0.12
VRK3-223ENST00000601341 COL23A1Q86Y22 540 aaPredicted RBP14.31□□□□□ -0.12
VRK3-223ENST00000601341 C16orf71Q8IYS4 520 aaPredicted RBP14.31□□□□□ -0.12
VRK3-223ENST00000601341 C4AP0C0L4 1744 aa14.31□□□□□ -0.12
VRK3-223ENST00000601341 CARMIL3Q8ND23 1372 aa14.31□□□□□ -0.12
VRK3-223ENST00000601341 ERFEQ4G0M1 354 aa14.3□□□□□ -0.12
VRK3-223ENST00000601341 SLC10A5Q5PT55 438 aa14.3□□□□□ -0.12
VRK3-223ENST00000601341 IL1RAPL2Q9NP60 686 aa14.3□□□□□ -0.12
VRK3-223ENST00000601341 STK32BQ9NY57 414 aa14.3□□□□□ -0.12
VRK3-223ENST00000601341 ANKRD18BA2A2Z9 1011 aa14.29□□□□□ -0.12
VRK3-223ENST00000601341 FRAT2O75474 233 aaPredicted RBP14.29□□□□□ -0.12
VRK3-223ENST00000601341 ITGA6P23229 1130 aa14.29□□□□□ -0.12
VRK3-223ENST00000601341 SLC15A2Q16348 729 aa14.29□□□□□ -0.12
VRK3-223ENST00000601341 CCDC152Q4G0S7 254 aa14.29□□□□□ -0.12
VRK3-223ENST00000601341 TAF7LQ5H9L4 462 aa14.29□□□□□ -0.12
VRK3-223ENST00000601341 DEFB132Q7Z7B7 95 aa14.29□□□□□ -0.12
VRK3-223ENST00000601341 PLEKHM2Q8IWE5 1019 aa14.29□□□□□ -0.12
VRK3-223ENST00000601341 CLASRPQ8N2M8 674 aaKnown RBP14.29□□□□□ -0.12
VRK3-223ENST00000601341 NLGN1Q8N2Q7 840 aa14.29□□□□□ -0.12
VRK3-223ENST00000601341 CCDC85AQ96PX6 553 aaPredicted RBP14.29□□□□□ -0.12
VRK3-223ENST00000601341 GREM2Q9H772 168 aa14.29□□□□□ -0.12
VRK3-223ENST00000601341 FBXO3Q9UK99 471 aa14.29□□□□□ -0.12
VRK3-223ENST00000601341 NPHP1O15259 732 aa14.29□□□□□ -0.12
VRK3-223ENST00000601341 SASH1O94885 1247 aa14.29□□□□□ -0.12
VRK3-223ENST00000601341 TM4SF1P30408 202 aa14.29□□□□□ -0.12
VRK3-223ENST00000601341 PNPLA7Q6ZV29 1317 aa14.28□□□□□ -0.12
VRK3-223ENST00000601341 EYA2O00167 538 aa14.28□□□□□ -0.12
VRK3-223ENST00000601341 CIAO1O76071 339 aa14.28□□□□□ -0.12
VRK3-223ENST00000601341 IL15P40933 162 aaPredicted RBP14.28□□□□□ -0.12
VRK3-223ENST00000601341 MFAP1P55081 439 aaKnown RBP14.28□□□□□ -0.12
VRK3-223ENST00000601341 ANO8Q9HCE9 1232 aaPredicted RBP14.28□□□□□ -0.12
VRK3-223ENST00000601341 SF3B3Q15393 1217 aaKnown RBP14.27□□□□□ -0.12
VRK3-223ENST00000601341 CNBD1Q8NA66 436 aa14.27□□□□□ -0.12
VRK3-223ENST00000601341 OTUD7AQ8TE49 926 aaPredicted RBP14.27□□□□□ -0.12
VRK3-223ENST00000601341 ZNF594Q96JF6 807 aaPredicted RBP14.27□□□□□ -0.12
VRK3-223ENST00000601341 NLRP3Q96P20 1036 aa14.27□□□□□ -0.12
VRK3-223ENST00000601341 RTL9Q8NET4 1388 aa14.27□□□□□ -0.13
VRK3-223ENST00000601341 MX1P20591 662 aa14.27□□□□□ -0.13
VRK3-223ENST00000601341 ATG9AQ7Z3C6 839 aa14.27□□□□□ -0.13
VRK3-223ENST00000601341 OSBPL3Q9H4L5 887 aa14.27□□□□□ -0.13
VRK3-223ENST00000601341 CHMP5Q9NZZ3 219 aa14.27□□□□□ -0.13
VRK3-223ENST00000601341 SERPINB2P05120 415 aa14.26□□□□□ -0.13
VRK3-223ENST00000601341 PDE1AP54750 535 aa14.26□□□□□ -0.13
VRK3-223ENST00000601341 LDHAL6AQ6ZMR3 332 aa14.26□□□□□ -0.13
VRK3-223ENST00000601341 HSCBQ8IWL3 235 aa14.26□□□□□ -0.13
VRK3-223ENST00000601341 COL24A1Q17RW2 1714 aa14.26□□□□□ -0.13
VRK3-223ENST00000601341 ABCC12Q96J65 1359 aa14.25□□□□□ -0.13
VRK3-223ENST00000601341 SALL3Q9BXA9 1300 aa14.25□□□□□ -0.13
VRK3-223ENST00000601341 IFIT2P09913 472 aaKnown RBP14.25□□□□□ -0.13
VRK3-223ENST00000601341 TFCP2Q12800 502 aa14.25□□□□□ -0.13
VRK3-223ENST00000601341 LRRC24Q50LG9 513 aa14.25□□□□□ -0.13
VRK3-223ENST00000601341 STAP2Q9UGK3 403 aa14.25□□□□□ -0.13
VRK3-223ENST00000601341 CIZ1Q9ULV3 898 aaPredicted RBP14.25□□□□□ -0.13
VRK3-223ENST00000601341 POLRMTO00411 1230 aaKnown RBP14.24□□□□□ -0.13
VRK3-223ENST00000601341 ST5P78524 1137 aa14.24□□□□□ -0.13
VRK3-223ENST00000601341 PRR5LQ6MZQ0 368 aa14.24□□□□□ -0.13
VRK3-223ENST00000601341 AACSQ86V21 672 aa14.24□□□□□ -0.13
VRK3-223ENST00000601341 PUS3Q9BZE2 481 aaKnown RBP14.24□□□□□ -0.13
VRK3-223ENST00000601341 GPR108Q9NPR9 543 aa14.24□□□□□ -0.13
VRK3-223ENST00000601341 CNNM1Q9NRU3 951 aa14.24□□□□□ -0.13
VRK3-223ENST00000601341 CEP126Q9P2H0 1117 aa14.24□□□□□ -0.13
VRK3-223ENST00000601341 CDC45O75419 566 aa14.24□□□□□ -0.13
VRK3-223ENST00000601341 DDR1Q08345 913 aa14.24□□□□□ -0.13
VRK3-223ENST00000601341 EAF2Q96CJ1 260 aaPredicted RBP14.24□□□□□ -0.13
VRK3-223ENST00000601341 CDC5LQ99459 802 aaKnown RBP14.24□□□□□ -0.13
VRK3-223ENST00000601341 AOX1Q06278 1338 aa14.23□□□□□ -0.13
VRK3-223ENST00000601341 IGHMBP2P38935 993 aaKnown RBP14.23□□□□□ -0.13
VRK3-223ENST00000601341 TNNI3KQ59H18 835 aa14.23□□□□□ -0.13
VRK3-223ENST00000601341 TTC22Q5TAA0 569 aa14.23□□□□□ -0.13
VRK3-223ENST00000601341 C3orf67Q6ZVT6 689 aa14.23□□□□□ -0.13
VRK3-223ENST00000601341 GPATCH3Q96I76 525 aa14.23□□□□□ -0.13
VRK3-223ENST00000601341 MPHOSPH8Q99549 860 aa14.23□□□□□ -0.13
VRK3-223ENST00000601341 SLKQ9H2G2 1235 aaPredicted RBP14.23□□□□□ -0.13
VRK3-223ENST00000601341 SEC31BQ9NQW1 1179 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms