RNA–Protein interactions for RNA: ENST00000600137.5

VRK3-219, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 822 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-219ENST00000600137 CCT4P50991 539 aaKnown RBP17.39■□□□□ 0.37
VRK3-219ENST00000600137 GPR162Q16538 588 aa17.39■□□□□ 0.37
VRK3-219ENST00000600137 CNKSR1Q969H4 720 aa17.39■□□□□ 0.37
VRK3-219ENST00000600137 CLUAP1Q96AJ1 413 aa17.39■□□□□ 0.37
VRK3-219ENST00000600137 ALDH1B1P30837 517 aa17.38■□□□□ 0.37
VRK3-219ENST00000600137 PRPF40BQ6NWY9 871 aaKnown RBP17.38■□□□□ 0.37
VRK3-219ENST00000600137 SUCLG2Q96I99 432 aa17.38■□□□□ 0.37
VRK3-219ENST00000600137 PLIN1O60240 522 aa17.37■□□□□ 0.37
VRK3-219ENST00000600137 CTSWP56202 376 aa17.37■□□□□ 0.37
VRK3-219ENST00000600137 OLFM4Q6UX06 510 aa17.37■□□□□ 0.37
VRK3-219ENST00000600137 TMEM57Q8N5G2 664 aa17.37■□□□□ 0.37
VRK3-219ENST00000600137 RPGRQ92834 1020 aaKnown RBP17.37■□□□□ 0.37
VRK3-219ENST00000600137 RBM17Q96I25 401 aaKnown RBP17.37■□□□□ 0.37
VRK3-219ENST00000600137 SEC31BQ9NQW1 1179 aa17.37■□□□□ 0.37
VRK3-219ENST00000600137 C9orf78Q9NZ63 289 aaPredicted RBP17.37■□□□□ 0.37
VRK3-219ENST00000600137 SNED1Q8TER0 1413 aa17.37■□□□□ 0.37
VRK3-219ENST00000600137 HSP90B1P14625 803 aaKnown RBP17.36■□□□□ 0.37
VRK3-219ENST00000600137 PELP1Q8IZL8 1130 aaKnown RBP17.36■□□□□ 0.37
VRK3-219ENST00000600137 CELF1Q92879 486 aaKnown RBP17.36■□□□□ 0.37
VRK3-219ENST00000600137 C21orf2O43822 256 aa17.35■□□□□ 0.37
VRK3-219ENST00000600137 GRAPQ13588 217 aa17.35■□□□□ 0.37
VRK3-219ENST00000600137 DZIP1LQ8IYY4 767 aaKnown RBP17.35■□□□□ 0.37
VRK3-219ENST00000600137 GRAPLQ8TC17 118 aaPredicted RBP17.35■□□□□ 0.37
VRK3-219ENST00000600137 CCDC85AQ96PX6 553 aaPredicted RBP17.35■□□□□ 0.37
VRK3-219ENST00000600137 MEIS3Q99687 375 aa17.35■□□□□ 0.37
VRK3-219ENST00000600137 GREM2Q9H772 168 aa17.35■□□□□ 0.37
VRK3-219ENST00000600137 RTL9Q8NET4 1388 aa17.35■□□□□ 0.37
VRK3-219ENST00000600137 GRIN3BO60391 1043 aa17.34■□□□□ 0.37
VRK3-219ENST00000600137 BBOX1O75936 387 aa17.34■□□□□ 0.37
VRK3-219ENST00000600137 FER1L6Q2WGJ9 1857 aa17.34■□□□□ 0.37
VRK3-219ENST00000600137 RABL6Q3YEC7 729 aaPredicted RBP17.34■□□□□ 0.37
VRK3-219ENST00000600137 DDX46Q7L014 1031 aaKnown RBP17.34■□□□□ 0.37
VRK3-219ENST00000600137 ANKRD44Q8N8A2 993 aa17.34■□□□□ 0.37
VRK3-219ENST00000600137 PANK1Q8TE04 598 aa17.34■□□□□ 0.37
VRK3-219ENST00000600137 PRELPP51888 382 aa17.33■□□□□ 0.36
VRK3-219ENST00000600137 CCDC152Q4G0S7 254 aa17.33■□□□□ 0.36
VRK3-219ENST00000600137 C20orf194Q5TEA3 1177 aa17.33■□□□□ 0.36
VRK3-219ENST00000600137 LMBR1LQ6UX01 489 aa17.33■□□□□ 0.36
VRK3-219ENST00000600137 ZNF219Q9P2Y4 722 aaPredicted RBP17.33■□□□□ 0.36
VRK3-219ENST00000600137 NFKBIEO00221 500 aa17.32■□□□□ 0.36
VRK3-219ENST00000600137 ZBTB7BO15156 539 aaPredicted RBP17.32■□□□□ 0.36
VRK3-219ENST00000600137 RPS8P62241 208 aaKnown RBP17.32■□□□□ 0.36
VRK3-219ENST00000600137 BICC1Q9H694 974 aaKnown RBP17.32■□□□□ 0.36
VRK3-219ENST00000600137 SBF1O95248 1867 aa17.31■□□□□ 0.36
VRK3-219ENST00000600137 FAM161AQ3B820 660 aa17.31■□□□□ 0.36
VRK3-219ENST00000600137 SP8Q8IXZ3 490 aa17.31■□□□□ 0.36
VRK3-219ENST00000600137 ATP6V0A2Q9Y487 856 aa17.31■□□□□ 0.36
VRK3-219ENST00000600137 PPEF1O14829 653 aaPredicted RBP17.3■□□□□ 0.36
VRK3-219ENST00000600137 ARHGAP27Q6ZUM4 889 aa17.3■□□□□ 0.36
VRK3-219ENST00000600137 LRRC37AA6NMS7 1700 aa17.3■□□□□ 0.36
VRK3-219ENST00000600137 UBTFL1P0CB47 393 aaPredicted RBP17.29■□□□□ 0.36
VRK3-219ENST00000600137 ITGA6P23229 1130 aa17.29■□□□□ 0.36
VRK3-219ENST00000600137 PDE3AQ14432 1141 aa17.29■□□□□ 0.36
VRK3-219ENST00000600137 CHD4Q14839 1912 aa17.28■□□□□ 0.36
VRK3-219ENST00000600137 DCAF8L1A6NGE4 600 aa17.28■□□□□ 0.36
VRK3-219ENST00000600137 RFX5P48382 616 aaPredicted RBP17.28■□□□□ 0.36
VRK3-219ENST00000600137 RASSF7Q02833 373 aa17.28■□□□□ 0.36
VRK3-219ENST00000600137 CC2D2BQ6DHV5 1058 aa17.28■□□□□ 0.36
VRK3-219ENST00000600137 FTSJ3Q8IY81 847 aaKnown RBP17.28■□□□□ 0.36
VRK3-219ENST00000600137 LRRFIP2Q9Y608 721 aaKnown RBP17.28■□□□□ 0.36
VRK3-219ENST00000600137 LTBP3Q9NS15 1303 aa17.27■□□□□ 0.36
VRK3-219ENST00000600137 CCDC88AQ3V6T2 1871 aa17.27■□□□□ 0.36
VRK3-219ENST00000600137 GNAI3P08754 354 aa17.27■□□□□ 0.36
VRK3-219ENST00000600137 MS4A1P11836 297 aa17.27■□□□□ 0.36
VRK3-219ENST00000600137 CCDC93Q567U6 631 aa17.27■□□□□ 0.36
VRK3-219ENST00000600137 TMC4Q7Z404 712 aa17.27■□□□□ 0.36
VRK3-219ENST00000600137 BSDC1Q9NW68 430 aaPredicted RBP17.27■□□□□ 0.36
VRK3-219ENST00000600137 LTBP1Q14766 1721 aa17.27■□□□□ 0.35
VRK3-219ENST00000600137 RRP1P56182 461 aaKnown RBP17.26■□□□□ 0.35
VRK3-219ENST00000600137 MVPQ14764 893 aaKnown RBP17.26■□□□□ 0.35
VRK3-219ENST00000600137 SOGA3Q5TF21 947 aa17.26■□□□□ 0.35
VRK3-219ENST00000600137 ANKRD18AQ8IVF6 992 aa17.26■□□□□ 0.35
VRK3-219ENST00000600137 ZNF594Q96JF6 807 aaPredicted RBP17.26■□□□□ 0.35
VRK3-219ENST00000600137 COG6Q9Y2V7 657 aa17.26■□□□□ 0.35
VRK3-219ENST00000600137 DUOX1Q9NRD9 1551 aa17.25■□□□□ 0.35
VRK3-219ENST00000600137 ANKRD18BA2A2Z9 1011 aa17.25■□□□□ 0.35
VRK3-219ENST00000600137 IFIT5Q13325 482 aaKnown RBP17.25■□□□□ 0.35
VRK3-219ENST00000600137 MTX1Q13505 466 aa17.25■□□□□ 0.35
VRK3-219ENST00000600137 ITPRIPQ8IWB1 547 aa17.25■□□□□ 0.35
VRK3-219ENST00000600137 RTKN2Q8IZC4 609 aa17.25■□□□□ 0.35
VRK3-219ENST00000600137 CDC5LQ99459 802 aaKnown RBP17.25■□□□□ 0.35
VRK3-219ENST00000600137 PSMD1Q99460 953 aa17.25■□□□□ 0.35
VRK3-219ENST00000600137 RTFDC1Q9BY42 306 aaPredicted RBP17.25■□□□□ 0.35
VRK3-219ENST00000600137 MINPP1Q9UNW1 487 aa17.25■□□□□ 0.35
VRK3-219ENST00000600137 SPEF2Q9C093 1822 aa17.25■□□□□ 0.35
VRK3-219ENST00000600137 WTIPA6NIX2 430 aaPredicted RBP17.24■□□□□ 0.35
VRK3-219ENST00000600137 GPSM2P81274 684 aa17.24■□□□□ 0.35
VRK3-219ENST00000600137 FKBP4Q02790 459 aaKnown RBP eCLIP17.24■□□□□ 0.35
VRK3-219ENST00000600137 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.24■□□□□ 0.35
VRK3-219ENST00000600137 PODXL2Q9NZ53 605 aa17.24■□□□□ 0.35
VRK3-219ENST00000600137 GNAI2P04899 355 aa17.23■□□□□ 0.35
VRK3-219ENST00000600137 PTPN12Q05209 780 aaKnown RBP17.23■□□□□ 0.35
VRK3-219ENST00000600137 CCDC57Q2TAC2 916 aa17.23■□□□□ 0.35
VRK3-219ENST00000600137 GRIPAP1Q4V328 841 aa17.23■□□□□ 0.35
VRK3-219ENST00000600137 PUS3Q9BZE2 481 aaKnown RBP17.23■□□□□ 0.35
VRK3-219ENST00000600137 TAOK3Q9H2K8 898 aa17.23■□□□□ 0.35
VRK3-219ENST00000600137 ZBTB40Q9NUA8 1239 aa17.23■□□□□ 0.35
VRK3-219ENST00000600137 POLLQ9UGP5 575 aa17.23■□□□□ 0.35
VRK3-219ENST00000600137 CHMP3Q9Y3E7 222 aa17.23■□□□□ 0.35
VRK3-219ENST00000600137 DICER1Q9UPY3 1922 aaKnown RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms