RNA–Protein interactions for RNA: ENST00000598570.5

USHBP1-209, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-209ENST00000598570 SP8Q8IXZ3 490 aa22.47■■□□□ 1.19
USHBP1-209ENST00000598570 GRAPLQ8TC17 118 aaPredicted RBP22.47■■□□□ 1.19
USHBP1-209ENST00000598570 RTL9Q8NET4 1388 aa22.47■■□□□ 1.19
USHBP1-209ENST00000598570 ALDH1L1O75891 902 aa22.46■■□□□ 1.19
USHBP1-209ENST00000598570 RARSP54136 660 aaKnown RBP22.46■■□□□ 1.19
USHBP1-209ENST00000598570 FKBP4Q02790 459 aaKnown RBP eCLIP22.46■■□□□ 1.19
USHBP1-209ENST00000598570 OLFM4Q6UX06 510 aa22.46■■□□□ 1.19
USHBP1-209ENST00000598570 DDX46Q7L014 1031 aaKnown RBP22.46■■□□□ 1.19
USHBP1-209ENST00000598570 TAOK3Q9H2K8 898 aa22.46■■□□□ 1.19
USHBP1-209ENST00000598570 TAF1P21675 1872 aa22.45■■□□□ 1.19
USHBP1-209ENST00000598570 RTFDC1Q9BY42 306 aaPredicted RBP22.45■■□□□ 1.18
USHBP1-209ENST00000598570 LRRC37AA6NMS7 1700 aa22.45■■□□□ 1.18
USHBP1-209ENST00000598570 UTYO14607 1347 aa22.44■■□□□ 1.18
USHBP1-209ENST00000598570 PPEF1O14829 653 aaPredicted RBP22.44■■□□□ 1.18
USHBP1-209ENST00000598570 CSF1RP07333 972 aa22.44■■□□□ 1.18
USHBP1-209ENST00000598570 TTLL11Q8NHH1 800 aa22.44■■□□□ 1.18
USHBP1-209ENST00000598570 VPS33BQ9H267 617 aa22.44■■□□□ 1.18
USHBP1-209ENST00000598570 RNF181Q9P0P0 153 aa22.44■■□□□ 1.18
USHBP1-209ENST00000598570 MYH3P11055 1940 aa22.43■■□□□ 1.18
USHBP1-209ENST00000598570 COL4A1P02462 1669 aa22.43■■□□□ 1.18
USHBP1-209ENST00000598570 RTL5Q5HYW3 569 aaPredicted RBP22.42■■□□□ 1.18
USHBP1-209ENST00000598570 ARHGAP45Q92619 1136 aa22.42■■□□□ 1.18
USHBP1-209ENST00000598570 JARID2Q92833 1246 aaPredicted RBP22.42■■□□□ 1.18
USHBP1-209ENST00000598570 ZNF219Q9P2Y4 722 aaPredicted RBP22.42■■□□□ 1.18
USHBP1-209ENST00000598570 CTSWP56202 376 aa22.41■■□□□ 1.18
USHBP1-209ENST00000598570 RPS8P62241 208 aaKnown RBP22.41■■□□□ 1.18
USHBP1-209ENST00000598570 CCDC152Q4G0S7 254 aa22.41■■□□□ 1.18
USHBP1-209ENST00000598570 UBE3BQ7Z3V4 1068 aa22.41■■□□□ 1.18
USHBP1-209ENST00000598570 CELF1Q92879 486 aaKnown RBP22.41■■□□□ 1.18
USHBP1-209ENST00000598570 SLC51AQ86UW1 340 aa22.4■■□□□ 1.18
USHBP1-209ENST00000598570 GRM8O00222 908 aa22.39■■□□□ 1.17
USHBP1-209ENST00000598570 FOXO4P98177 505 aa22.39■■□□□ 1.17
USHBP1-209ENST00000598570 SRCIN1Q9C0H9 1055 aa22.39■■□□□ 1.17
USHBP1-209ENST00000598570 SMC4Q9NTJ3 1288 aa22.39■■□□□ 1.17
USHBP1-209ENST00000598570 LTBP1Q14766 1721 aa22.39■■□□□ 1.17
USHBP1-209ENST00000598570 SEC31BQ9NQW1 1179 aa22.38■■□□□ 1.17
USHBP1-209ENST00000598570 BCL2L13Q9BXK5 485 aa22.37■■□□□ 1.17
USHBP1-209ENST00000598570 PODXL2Q9NZ53 605 aa22.37■■□□□ 1.17
USHBP1-209ENST00000598570 TIAM2Q8IVF5 1701 aa22.37■■□□□ 1.17
USHBP1-209ENST00000598570 GLTPD2A6NH11 291 aa22.36■■□□□ 1.17
USHBP1-209ENST00000598570 KAZALD1Q96I82 304 aa22.36■■□□□ 1.17
USHBP1-209ENST00000598570 NOB1Q9ULX3 412 aaKnown RBP22.36■■□□□ 1.17
USHBP1-209ENST00000598570 DUOX1Q9NRD9 1551 aa22.36■■□□□ 1.17
USHBP1-209ENST00000598570 FZD9O00144 591 aa22.35■■□□□ 1.17
USHBP1-209ENST00000598570 IARSP41252 1262 aaKnown RBP22.35■■□□□ 1.17
USHBP1-209ENST00000598570 USP44Q9H0E7 712 aa22.35■■□□□ 1.17
USHBP1-209ENST00000598570 ZNF277Q9NRM2 450 aaPredicted RBP22.35■■□□□ 1.17
USHBP1-209ENST00000598570 COL4A5P29400 1685 aa22.34■■□□□ 1.17
USHBP1-209ENST00000598570 MPNDQ8N594 471 aa22.34■■□□□ 1.17
USHBP1-209ENST00000598570 GREM2Q9H772 168 aa22.34■■□□□ 1.17
USHBP1-209ENST00000598570 BSDC1Q9NW68 430 aaPredicted RBP22.34■■□□□ 1.17
USHBP1-209ENST00000598570 KIF3CO14782 793 aa22.33■■□□□ 1.17
USHBP1-209ENST00000598570 EPHA10Q5JZY3 1008 aa22.33■■□□□ 1.17
USHBP1-209ENST00000598570 SLC4A10Q6U841 1118 aa22.33■■□□□ 1.17
USHBP1-209ENST00000598570 SUPT20HQ8NEM7 779 aa22.33■■□□□ 1.17
USHBP1-209ENST00000598570 API5Q9BZZ5 524 aaKnown RBP22.33■■□□□ 1.17
USHBP1-209ENST00000598570 GPBP1L1Q9HC44 474 aaPredicted RBP22.33■■□□□ 1.17
USHBP1-209ENST00000598570 KIF16BQ96L93 1317 aa22.32■■□□□ 1.16
USHBP1-209ENST00000598570 NBPF7P0C2Y1 421 aaPredicted RBP22.32■■□□□ 1.16
USHBP1-209ENST00000598570 CDC5LQ99459 802 aaKnown RBP22.32■■□□□ 1.16
USHBP1-209ENST00000598570 TMX4Q9H1E5 349 aaPredicted RBP22.32■■□□□ 1.16
USHBP1-209ENST00000598570 KDM2BQ8NHM5 1336 aa22.31■■□□□ 1.16
USHBP1-209ENST00000598570 WDR90Q96KV7 1748 aa22.31■■□□□ 1.16
USHBP1-209ENST00000598570 POTECB2RU33 542 aa22.31■■□□□ 1.16
USHBP1-209ENST00000598570 CCT4P50991 539 aaKnown RBP22.31■■□□□ 1.16
USHBP1-209ENST00000598570 KIAA2012Q0VF49 1180 aa22.31■■□□□ 1.16
USHBP1-209ENST00000598570 RABL6Q3YEC7 729 aaPredicted RBP22.31■■□□□ 1.16
USHBP1-209ENST00000598570 INTS3Q68E01 1043 aaKnown RBP22.31■■□□□ 1.16
USHBP1-209ENST00000598570 DPP8Q6V1X1 898 aaPredicted RBP22.31■■□□□ 1.16
USHBP1-209ENST00000598570 C9orf78Q9NZ63 289 aaPredicted RBP22.31■■□□□ 1.16
USHBP1-209ENST00000598570 BCAR3O75815 825 aa22.3■■□□□ 1.16
USHBP1-209ENST00000598570 GPSM2P81274 684 aa22.3■■□□□ 1.16
USHBP1-209ENST00000598570 ANKRD18AQ8IVF6 992 aa22.3■■□□□ 1.16
USHBP1-209ENST00000598570 L3MBTL3Q96JM7 780 aaPredicted RBP22.29■■□□□ 1.16
USHBP1-209ENST00000598570 POLLQ9UGP5 575 aa22.29■■□□□ 1.16
USHBP1-209ENST00000598570 IPO8O15397 1037 aaKnown RBP22.28■■□□□ 1.16
USHBP1-209ENST00000598570 ITGA6P23229 1130 aa22.28■■□□□ 1.16
USHBP1-209ENST00000598570 DPY19L2Q6NUT2 758 aa22.28■■□□□ 1.16
USHBP1-209ENST00000598570 MINPP1Q9UNW1 487 aa22.28■■□□□ 1.16
USHBP1-209ENST00000598570 FAM161AQ3B820 660 aa22.27■■□□□ 1.16
USHBP1-209ENST00000598570 LMBR1LQ6UX01 489 aa22.27■■□□□ 1.16
USHBP1-209ENST00000598570 TBC1D16Q8TBP0 767 aa22.27■■□□□ 1.16
USHBP1-209ENST00000598570 SUCLG2Q96I99 432 aa22.27■■□□□ 1.16
USHBP1-209ENST00000598570 CCDC85AQ96PX6 553 aaPredicted RBP22.27■■□□□ 1.16
USHBP1-209ENST00000598570 NMRK2Q9NPI5 230 aa22.27■■□□□ 1.16
USHBP1-209ENST00000598570 TRIM27P14373 513 aa22.26■■□□□ 1.15
USHBP1-209ENST00000598570 ATF7IPQ6VMQ6 1270 aa22.26■■□□□ 1.15
USHBP1-209ENST00000598570 ANKRD44Q8N8A2 993 aa22.26■■□□□ 1.15
USHBP1-209ENST00000598570 NSFL1CQ9UNZ2 370 aaKnown RBP22.26■■□□□ 1.15
USHBP1-209ENST00000598570 LARGE2Q8N3Y3 721 aa22.25■■□□□ 1.15
USHBP1-209ENST00000598570 JDP2Q8WYK2 163 aa22.25■■□□□ 1.15
USHBP1-209ENST00000598570 ANKRD18BA2A2Z9 1011 aa22.24■■□□□ 1.15
USHBP1-209ENST00000598570 IFIT5Q13325 482 aaKnown RBP22.24■■□□□ 1.15
USHBP1-209ENST00000598570 AOC3Q16853 763 aa22.24■■□□□ 1.15
USHBP1-209ENST00000598570 GPC2Q8N158 579 aa22.24■■□□□ 1.15
USHBP1-209ENST00000598570 ZNF526Q8TF50 670 aaPredicted RBP22.24■■□□□ 1.15
USHBP1-209ENST00000598570 ZNRF3Q9ULT6 936 aa22.24■■□□□ 1.15
USHBP1-209ENST00000598570 XDHP47989 1333 aa22.24■■□□□ 1.15
USHBP1-209ENST00000598570 ZNF541Q9H0D2 1346 aa22.24■■□□□ 1.15
USHBP1-209ENST00000598570 PPIP5K2O43314 1243 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms