RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 CALD1Q05682 793 aaKnown RBP13.78□□□□□ -0.2
VRK3-214ENST00000598553 SF3B3Q15393 1217 aaKnown RBP13.78□□□□□ -0.2
VRK3-214ENST00000598553 TWISTNBQ3B726 338 aaPredicted RBP13.78□□□□□ -0.2
VRK3-214ENST00000598553 FAM9BQ8IZU0 186 aa13.78□□□□□ -0.2
VRK3-214ENST00000598553 LARGE2Q8N3Y3 721 aa13.78□□□□□ -0.2
VRK3-214ENST00000598553 CCDC85AQ96PX6 553 aaPredicted RBP13.78□□□□□ -0.2
VRK3-214ENST00000598553 METTL22Q9BUU2 404 aaPredicted RBP13.78□□□□□ -0.2
VRK3-214ENST00000598553 PSME4Q14997 1843 aa13.78□□□□□ -0.2
VRK3-214ENST00000598553 SHTN1A0MZ66 631 aa13.77□□□□□ -0.21
VRK3-214ENST00000598553 YDJCA8MPS7 323 aa13.77□□□□□ -0.21
VRK3-214ENST00000598553 FMR1Q06787 632 aaKnown RBP eCLIP13.77□□□□□ -0.21
VRK3-214ENST00000598553 GOLGA2Q08379 1002 aa13.77□□□□□ -0.21
VRK3-214ENST00000598553 TRIM28Q13263 835 aaKnown RBP13.77□□□□□ -0.21
VRK3-214ENST00000598553 CWF19L2Q2TBE0 894 aaKnown RBP13.77□□□□□ -0.21
VRK3-214ENST00000598553 CC2D2BQ6DHV5 1058 aa13.77□□□□□ -0.21
VRK3-214ENST00000598553 SP8Q8IXZ3 490 aa13.77□□□□□ -0.21
VRK3-214ENST00000598553 RTFDC1Q9BY42 306 aaPredicted RBP13.77□□□□□ -0.21
VRK3-214ENST00000598553 GJA3Q9Y6H8 435 aa13.77□□□□□ -0.21
VRK3-214ENST00000598553 PI4KAP2A4QPH2 592 aa13.76□□□□□ -0.21
VRK3-214ENST00000598553 EPHX2P34913 555 aa13.76□□□□□ -0.21
VRK3-214ENST00000598553 EPS15P42566 896 aa13.76□□□□□ -0.21
VRK3-214ENST00000598553 EXOSC9Q06265 439 aaKnown RBP13.76□□□□□ -0.21
VRK3-214ENST00000598553 EAPPQ56P03 285 aaPredicted RBP13.76□□□□□ -0.21
VRK3-214ENST00000598553 CCDC30Q5VVM6 783 aa13.76□□□□□ -0.21
VRK3-214ENST00000598553 CHADLQ6NUI6 762 aa13.76□□□□□ -0.21
VRK3-214ENST00000598553 DDX46Q7L014 1031 aaKnown RBP13.76□□□□□ -0.21
VRK3-214ENST00000598553 PI4KAP1Q8N8J0 262 aa13.76□□□□□ -0.21
VRK3-214ENST00000598553 KLRG1Q96E93 195 aa13.76□□□□□ -0.21
VRK3-214ENST00000598553 POLR2AP24928 1970 aaKnown RBP13.76□□□□□ -0.21
VRK3-214ENST00000598553 TRPM7Q96QT4 1865 aa13.76□□□□□ -0.21
VRK3-214ENST00000598553 IL16Q14005 1332 aa13.75□□□□□ -0.21
VRK3-214ENST00000598553 PASKQ96RG2 1323 aa13.75□□□□□ -0.21
VRK3-214ENST00000598553 GPSM2P81274 684 aa13.75□□□□□ -0.21
VRK3-214ENST00000598553 CXCL9Q07325 125 aa13.75□□□□□ -0.21
VRK3-214ENST00000598553 MPNDQ8N594 471 aa13.75□□□□□ -0.21
VRK3-214ENST00000598553 ZBTB38Q8NAP3 1195 aaPredicted RBP13.75□□□□□ -0.21
VRK3-214ENST00000598553 HACL1Q9UJ83 578 aa13.75□□□□□ -0.21
VRK3-214ENST00000598553 WTIPA6NIX2 430 aaPredicted RBP13.74□□□□□ -0.21
VRK3-214ENST00000598553 VAMP4O75379 141 aa13.74□□□□□ -0.21
VRK3-214ENST00000598553 BBOX1O75936 387 aa13.74□□□□□ -0.21
VRK3-214ENST00000598553 ITGBL1O95965 494 aaPredicted RBP13.74□□□□□ -0.21
VRK3-214ENST00000598553 PCCAP05165 728 aaPredicted RBP13.74□□□□□ -0.21
VRK3-214ENST00000598553 MAP1SQ66K74 1059 aaPredicted RBP13.74□□□□□ -0.21
VRK3-214ENST00000598553 DPP8Q6V1X1 898 aaPredicted RBP13.74□□□□□ -0.21
VRK3-214ENST00000598553 KSR2Q6VAB6 950 aa13.74□□□□□ -0.21
VRK3-214ENST00000598553 NIM1KQ8IY84 436 aa13.74□□□□□ -0.21
VRK3-214ENST00000598553 GPC2Q8N158 579 aa13.74□□□□□ -0.21
VRK3-214ENST00000598553 JDP2Q8WYK2 163 aa13.74□□□□□ -0.21
VRK3-214ENST00000598553 POLLQ9UGP5 575 aa13.74□□□□□ -0.21
VRK3-214ENST00000598553 ZNF521Q96K83 1311 aa13.73□□□□□ -0.21
VRK3-214ENST00000598553 EIF6P56537 245 aaKnown RBP13.73□□□□□ -0.21
VRK3-214ENST00000598553 KIAA2012Q0VF49 1180 aa13.73□□□□□ -0.21
VRK3-214ENST00000598553 LDHDQ86WU2 507 aa13.73□□□□□ -0.21
VRK3-214ENST00000598553 CCDC191Q8NCU4 936 aa13.73□□□□□ -0.21
VRK3-214ENST00000598553 KCNQ5Q9NR82 932 aa13.73□□□□□ -0.21
VRK3-214ENST00000598553 CWC25Q9NXE8 425 aaPredicted RBP13.73□□□□□ -0.21
VRK3-214ENST00000598553 IQCA1LA6NCM1 817 aa13.72□□□□□ -0.21
VRK3-214ENST00000598553 NEURL1BA8MQ27 555 aa13.72□□□□□ -0.21
VRK3-214ENST00000598553 RIMBP2O15034 1052 aa13.72□□□□□ -0.21
VRK3-214ENST00000598553 RAD17O75943 681 aa13.72□□□□□ -0.21
VRK3-214ENST00000598553 SLC4A2P04920 1241 aa13.72□□□□□ -0.21
VRK3-214ENST00000598553 DBNDD1Q9H9R9 158 aa13.72□□□□□ -0.21
VRK3-214ENST00000598553 RTL9Q8NET4 1388 aa13.71□□□□□ -0.21
VRK3-214ENST00000598553 F6X3S4 739 aa13.71□□□□□ -0.21
VRK3-214ENST00000598553 CASP7P55210 303 aa13.71□□□□□ -0.21
VRK3-214ENST00000598553 FLIIQ13045 1269 aa13.71□□□□□ -0.21
VRK3-214ENST00000598553 NCBP3Q53F19 620 aaKnown RBP13.71□□□□□ -0.21
VRK3-214ENST00000598553 WDR63Q8IWG1 891 aa13.71□□□□□ -0.21
VRK3-214ENST00000598553 JMYQ8N9B5 988 aa13.71□□□□□ -0.21
VRK3-214ENST00000598553 ZNRF3Q9ULT6 936 aa13.71□□□□□ -0.21
VRK3-214ENST00000598553 NSFL1CQ9UNZ2 370 aaKnown RBP13.71□□□□□ -0.21
VRK3-214ENST00000598553 CDHR2Q9BYE9 1310 aa13.7□□□□□ -0.22
VRK3-214ENST00000598553 PDE8AO60658 829 aa13.7□□□□□ -0.22
VRK3-214ENST00000598553 GMPSP49915 693 aaPredicted RBP13.7□□□□□ -0.22
VRK3-214ENST00000598553 RPS8P62241 208 aaKnown RBP13.7□□□□□ -0.22
VRK3-214ENST00000598553 TRPM4Q8TD43 1214 aa13.7□□□□□ -0.22
VRK3-214ENST00000598553 STK31Q9BXU1 1019 aa13.7□□□□□ -0.22
VRK3-214ENST00000598553 GREM2Q9H772 168 aa13.7□□□□□ -0.22
VRK3-214ENST00000598553 MKRN1Q9UHC7 482 aaKnown RBP13.7□□□□□ -0.22
VRK3-214ENST00000598553 CLEC11AQ9Y240 323 aa13.7□□□□□ -0.22
VRK3-214ENST00000598553 ZBTB12Q9Y330 459 aaPredicted RBP13.7□□□□□ -0.22
VRK3-214ENST00000598553 TRAF5O00463 557 aa13.69□□□□□ -0.22
VRK3-214ENST00000598553 DDX58O95786 925 aaKnown RBP13.69□□□□□ -0.22
VRK3-214ENST00000598553 EGFRP00533 1210 aa13.69□□□□□ -0.22
VRK3-214ENST00000598553 HIRAP54198 1017 aaPredicted RBP13.69□□□□□ -0.22
VRK3-214ENST00000598553 CTSWP56202 376 aa13.69□□□□□ -0.22
VRK3-214ENST00000598553 DOK7Q18PE1 504 aa13.69□□□□□ -0.22
VRK3-214ENST00000598553 GRIPAP1Q4V328 841 aa13.69□□□□□ -0.22
VRK3-214ENST00000598553 DLK2Q6UY11 383 aa13.69□□□□□ -0.22
VRK3-214ENST00000598553 UBE3BQ7Z3V4 1068 aa13.69□□□□□ -0.22
VRK3-214ENST00000598553 SUPT20HQ8NEM7 779 aa13.69□□□□□ -0.22
VRK3-214ENST00000598553 TBC1D16Q8TBP0 767 aa13.69□□□□□ -0.22
VRK3-214ENST00000598553 GPRC5DQ9NZD1 345 aa13.69□□□□□ -0.22
VRK3-214ENST00000598553 H7C1W4 665 aa13.68□□□□□ -0.22
VRK3-214ENST00000598553 CIAPIN1Q6FI81 312 aa13.68□□□□□ -0.22
VRK3-214ENST00000598553 CNTROBQ8N137 903 aa13.68□□□□□ -0.22
VRK3-214ENST00000598553 TTLL11Q8NHH1 800 aa13.68□□□□□ -0.22
VRK3-214ENST00000598553 C6orf229H3BNL8 230 aa13.67□□□□□ -0.22
VRK3-214ENST00000598553 PSMD14O00487 310 aa13.67□□□□□ -0.22
VRK3-214ENST00000598553 ECE2O60344 883 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms