RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 EXOC6BQ9Y2D4 811 aa19.14■□□□□ 0.65
UPF1-206ENST00000598471 NOP58Q9Y2X3 529 aaKnown RBP19.14■□□□□ 0.65
UPF1-206ENST00000598471 TM4SF1P30408 202 aa19.13■□□□□ 0.65
UPF1-206ENST00000598471 G3BP1Q13283 466 aaKnown RBP eCLIP19.13■□□□□ 0.651e-6■□□□□ 10.2
UPF1-206ENST00000598471 CCDC152Q4G0S7 254 aa19.13■□□□□ 0.65
UPF1-206ENST00000598471 SLC10A5Q5PT55 438 aa19.13■□□□□ 0.65
UPF1-206ENST00000598471 ST5P78524 1137 aa19.12■□□□□ 0.65
UPF1-206ENST00000598471 IFIT5Q13325 482 aaKnown RBP19.12■□□□□ 0.65
UPF1-206ENST00000598471 TAF7LQ5H9L4 462 aa19.12■□□□□ 0.65
UPF1-206ENST00000598471 CHD1LQ86WJ1 897 aa19.12■□□□□ 0.65
UPF1-206ENST00000598471 TTLL11Q8NHH1 800 aa19.12■□□□□ 0.65
UPF1-206ENST00000598471 LRRCC1Q9C099 1032 aa19.12■□□□□ 0.65
UPF1-206ENST00000598471 SPON1Q9HCB6 807 aa19.12■□□□□ 0.65
UPF1-206ENST00000598471 COPRSQ9NQ92 184 aa19.12■□□□□ 0.65
UPF1-206ENST00000598471 MYH3P11055 1940 aa19.12■□□□□ 0.65
UPF1-206ENST00000598471 RIC1Q4ADV7 1423 aa19.11■□□□□ 0.65
UPF1-206ENST00000598471 ANKRD18BA2A2Z9 1011 aa19.11■□□□□ 0.65
UPF1-206ENST00000598471 APBB1O00213 710 aa19.11■□□□□ 0.65
UPF1-206ENST00000598471 SERPINB2P05120 415 aa19.11■□□□□ 0.65
UPF1-206ENST00000598471 RFX5P48382 616 aaPredicted RBP19.11■□□□□ 0.65
UPF1-206ENST00000598471 FAM161AQ3B820 660 aa19.11■□□□□ 0.65
UPF1-206ENST00000598471 SLC16A10Q8TF71 515 aa19.11■□□□□ 0.65
UPF1-206ENST00000598471 KIF1BPQ96EK5 621 aa19.11■□□□□ 0.65
UPF1-206ENST00000598471 MTFR1LQ9H019 292 aa19.11■□□□□ 0.65
UPF1-206ENST00000598471 DDX60Q8IY21 1712 aaKnown RBP19.11■□□□□ 0.65
UPF1-206ENST00000598471 RTL9Q8NET4 1388 aa19.1■□□□□ 0.65
UPF1-206ENST00000598471 ABCC12Q96J65 1359 aa19.1■□□□□ 0.65
UPF1-206ENST00000598471 POLRMTO00411 1230 aaKnown RBP19.1■□□□□ 0.65
UPF1-206ENST00000598471 PTGER2P43116 358 aa19.1■□□□□ 0.65
UPF1-206ENST00000598471 PTPN12Q05209 780 aaKnown RBP19.1■□□□□ 0.65
UPF1-206ENST00000598471 NLRP3Q96P20 1036 aa19.1■□□□□ 0.65
UPF1-206ENST00000598471 FBXO3Q9UK99 471 aa19.1■□□□□ 0.65
UPF1-206ENST00000598471 PA2G4Q9UQ80 394 aaKnown RBP19.1■□□□□ 0.65
UPF1-206ENST00000598471 PARP3Q9Y6F1 533 aa19.1■□□□□ 0.65
UPF1-206ENST00000598471 ITGA6P23229 1130 aa19.09■□□□□ 0.65
UPF1-206ENST00000598471 DDR1Q08345 913 aa19.09■□□□□ 0.65
UPF1-206ENST00000598471 MSL1Q68DK7 614 aa19.09■□□□□ 0.65
UPF1-206ENST00000598471 PRR5LQ6MZQ0 368 aa19.09■□□□□ 0.65
UPF1-206ENST00000598471 CCDC85AQ96PX6 553 aaPredicted RBP19.09■□□□□ 0.65
UPF1-206ENST00000598471 LNPKQ9C0E8 428 aa19.09■□□□□ 0.65
UPF1-206ENST00000598471 GREM2Q9H772 168 aa19.09■□□□□ 0.65
UPF1-206ENST00000598471 SF3B3Q15393 1217 aaKnown RBP19.08■□□□□ 0.64
UPF1-206ENST00000598471 SGIP1Q9BQI5 828 aa19.08■□□□□ 0.64
UPF1-206ENST00000598471 SIL1Q9H173 461 aa19.08■□□□□ 0.64
UPF1-206ENST00000598471 CASZ1Q86V15 1759 aa19.07■□□□□ 0.64
UPF1-206ENST00000598471 MMP10P09238 476 aa19.07■□□□□ 0.64
UPF1-206ENST00000598471 RHPN1Q8TCX5 695 aa19.07■□□□□ 0.64
UPF1-206ENST00000598471 CIAO1O76071 339 aa19.06■□□□□ 0.64
UPF1-206ENST00000598471 IL15P40933 162 aaPredicted RBP19.06■□□□□ 0.64
UPF1-206ENST00000598471 RGS3P49796 1198 aa19.06■□□□□ 0.64
UPF1-206ENST00000598471 KLHDC4Q8TBB5 520 aa19.06■□□□□ 0.64
UPF1-206ENST00000598471 CDC5LQ99459 802 aaKnown RBP19.06■□□□□ 0.64
UPF1-206ENST00000598471 EYA2O00167 538 aa19.05■□□□□ 0.64
UPF1-206ENST00000598471 SMARCA5O60264 1052 aaPredicted RBP19.04■□□□□ 0.64
UPF1-206ENST00000598471 IGHMBP2P38935 993 aaKnown RBP19.04■□□□□ 0.64
UPF1-206ENST00000598471 CLASRPQ8N2M8 674 aaKnown RBP19.04■□□□□ 0.64
UPF1-206ENST00000598471 ZNF594Q96JF6 807 aaPredicted RBP19.04■□□□□ 0.64
UPF1-206ENST00000598471 NRXN2Q9P2S2 1712 aa19.03■□□□□ 0.64
UPF1-206ENST00000598471 LDHAL6AQ6ZMR3 332 aa19.03■□□□□ 0.64
UPF1-206ENST00000598471 DDX46Q7L014 1031 aaKnown RBP19.03■□□□□ 0.64
UPF1-206ENST00000598471 CCDC24Q8N4L8 307 aa19.03■□□□□ 0.64
UPF1-206ENST00000598471 MPHOSPH8Q99549 860 aa19.03■□□□□ 0.64
UPF1-206ENST00000598471 CNNM1Q9NRU3 951 aa19.03■□□□□ 0.64
UPF1-206ENST00000598471 PDE4AP27815 886 aa19.02■□□□□ 0.64
UPF1-206ENST00000598471 C3orf67Q6ZVT6 689 aa19.02■□□□□ 0.64
UPF1-206ENST00000598471 BCL11AQ9H165 835 aa19.02■□□□□ 0.64
UPF1-206ENST00000598471 IL1RAPL2Q9NP60 686 aa19.02■□□□□ 0.64
UPF1-206ENST00000598471 LRP5O75197 1615 aa19.02■□□□□ 0.64
UPF1-206ENST00000598471 TNRC6CQ9HCJ0 1690 aaKnown RBP19.01■□□□□ 0.63
UPF1-206ENST00000598471 SASH1O94885 1247 aa19.01■□□□□ 0.63
UPF1-206ENST00000598471 SKAP1Q86WV1 359 aa19.01■□□□□ 0.63
UPF1-206ENST00000598471 ANKRD18AQ8IVF6 992 aa19.01■□□□□ 0.63
UPF1-206ENST00000598471 RPGRQ92834 1020 aaKnown RBP19.01■□□□□ 0.63
UPF1-206ENST00000598471 BRIP1Q9BX63 1249 aa19.01■□□□□ 0.63
UPF1-206ENST00000598471 SEC31BQ9NQW1 1179 aa19.01■□□□□ 0.63
UPF1-206ENST00000598471 CEP126Q9P2H0 1117 aa19.01■□□□□ 0.63
UPF1-206ENST00000598471 PDE6BP35913 854 aa19■□□□□ 0.63
UPF1-206ENST00000598471 LRRC24Q50LG9 513 aa19■□□□□ 0.63
UPF1-206ENST00000598471 ATG9AQ7Z3C6 839 aa19■□□□□ 0.63
UPF1-206ENST00000598471 IFIT2P09913 472 aaKnown RBP18.99■□□□□ 0.63
UPF1-206ENST00000598471 POLD1P28340 1107 aa18.99■□□□□ 0.63
UPF1-206ENST00000598471 TFCP2Q12800 502 aa18.99■□□□□ 0.63
UPF1-206ENST00000598471 METTL24Q5JXM2 366 aa18.99■□□□□ 0.63
UPF1-206ENST00000598471 RBM17Q96I25 401 aaKnown RBP18.99■□□□□ 0.63
UPF1-206ENST00000598471 GPATCH3Q96I76 525 aa18.99■□□□□ 0.63
UPF1-206ENST00000598471 PUS3Q9BZE2 481 aaKnown RBP18.99■□□□□ 0.63
UPF1-206ENST00000598471 GPR108Q9NPR9 543 aa18.99■□□□□ 0.63
UPF1-206ENST00000598471 PPP1R1BQ9UD71 204 aaPredicted RBP18.99■□□□□ 0.63
UPF1-206ENST00000598471 AKAP2Q9Y2D5 859 aa18.99■□□□□ 0.63
UPF1-206ENST00000598471 MROH5Q6ZUA9 1318 aa18.99■□□□□ 0.63
UPF1-206ENST00000598471 CRY2Q49AN0 593 aa18.98■□□□□ 0.63
UPF1-206ENST00000598471 AACSQ86V21 672 aa18.98■□□□□ 0.63
UPF1-206ENST00000598471 KLRG2A4D1S0 409 aaPredicted RBP18.97■□□□□ 0.63
UPF1-206ENST00000598471 MX1P20591 662 aa18.97■□□□□ 0.63
UPF1-206ENST00000598471 PLEKHM2Q8IWE5 1019 aa18.97■□□□□ 0.63
UPF1-206ENST00000598471 C16orf71Q8IYS4 520 aaPredicted RBP18.97■□□□□ 0.63
UPF1-206ENST00000598471 RIPOR2Q9Y4F9 1068 aa18.97■□□□□ 0.63
UPF1-206ENST00000598471 RPS8P62241 208 aaKnown RBP18.96■□□□□ 0.63
UPF1-206ENST00000598471 GRAPQ13588 217 aa18.96■□□□□ 0.63
UPF1-206ENST00000598471 TNNI3KQ59H18 835 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms