RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 SOGA3Q5TF21 947 aa14.2□□□□□ -0.14
VRK3-210ENST00000596121 DDX46Q7L014 1031 aaKnown RBP14.2□□□□□ -0.14
VRK3-210ENST00000596121 GRAPLQ8TC17 118 aaPredicted RBP14.2□□□□□ -0.14
VRK3-210ENST00000596121 ZNF526Q8TF50 670 aaPredicted RBP14.2□□□□□ -0.14
VRK3-210ENST00000596121 ZNF277Q9NRM2 450 aaPredicted RBP14.2□□□□□ -0.14
VRK3-210ENST00000596121 ATP6V0A2Q9Y487 856 aa14.2□□□□□ -0.14
VRK3-210ENST00000596121 ZBED9Q6R2W3 1325 aa14.19□□□□□ -0.14
VRK3-210ENST00000596121 BBOX1O75936 387 aa14.19□□□□□ -0.14
VRK3-210ENST00000596121 FKBP4Q02790 459 aaKnown RBP eCLIP14.19□□□□□ -0.14
VRK3-210ENST00000596121 SLC4A10Q6U841 1118 aa14.19□□□□□ -0.14
VRK3-210ENST00000596121 RTKN2Q8IZC4 609 aa14.19□□□□□ -0.14
VRK3-210ENST00000596121 TTLL11Q8NHH1 800 aa14.19□□□□□ -0.14
VRK3-210ENST00000596121 SMC4Q9NTJ3 1288 aa14.19□□□□□ -0.14
VRK3-210ENST00000596121 SP8Q8IXZ3 490 aa14.18□□□□□ -0.14
VRK3-210ENST00000596121 PLA2G12BQ9BX93 195 aa14.18□□□□□ -0.14
VRK3-210ENST00000596121 NOB1Q9ULX3 412 aaKnown RBP14.18□□□□□ -0.14
VRK3-210ENST00000596121 CCDC88AQ3V6T2 1871 aa14.18□□□□□ -0.14
VRK3-210ENST00000596121 PTPRCP08575 1304 aa14.17□□□□□ -0.14
VRK3-210ENST00000596121 BRPF1P55201 1214 aaPredicted RBP14.17□□□□□ -0.14
VRK3-210ENST00000596121 CTSWP56202 376 aa14.17□□□□□ -0.14
VRK3-210ENST00000596121 FOXO4P98177 505 aa14.17□□□□□ -0.14
VRK3-210ENST00000596121 EPHA10Q5JZY3 1008 aa14.17□□□□□ -0.14
VRK3-210ENST00000596121 CC2D2BQ6DHV5 1058 aa14.17□□□□□ -0.14
VRK3-210ENST00000596121 PSMD1Q99460 953 aa14.17□□□□□ -0.14
VRK3-210ENST00000596121 GREM2Q9H772 168 aa14.17□□□□□ -0.14
VRK3-210ENST00000596121 COL4A5P29400 1685 aa14.17□□□□□ -0.14
VRK3-210ENST00000596121 BCAR3O75815 825 aa14.16□□□□□ -0.14
VRK3-210ENST00000596121 ALDH1L1O75891 902 aa14.16□□□□□ -0.14
VRK3-210ENST00000596121 CSF1RP07333 972 aa14.16□□□□□ -0.14
VRK3-210ENST00000596121 RPS8P62241 208 aaKnown RBP14.16□□□□□ -0.14
VRK3-210ENST00000596121 KAZALD1Q96I82 304 aa14.16□□□□□ -0.14
VRK3-210ENST00000596121 SRCIN1Q9C0H9 1055 aa14.16□□□□□ -0.14
VRK3-210ENST00000596121 TNNQ9UQP3 1299 aa14.16□□□□□ -0.14
VRK3-210ENST00000596121 GRM8O00222 908 aa14.15□□□□□ -0.14
VRK3-210ENST00000596121 NBPF7P0C2Y1 421 aaPredicted RBP14.15□□□□□ -0.14
VRK3-210ENST00000596121 IARSP41252 1262 aaKnown RBP14.15□□□□□ -0.14
VRK3-210ENST00000596121 GPSM2P81274 684 aa14.15□□□□□ -0.14
VRK3-210ENST00000596121 CCDC152Q4G0S7 254 aa14.15□□□□□ -0.14
VRK3-210ENST00000596121 RTFDC1Q9BY42 306 aaPredicted RBP14.15□□□□□ -0.14
VRK3-210ENST00000596121 NMRK2Q9NPI5 230 aa14.15□□□□□ -0.14
VRK3-210ENST00000596121 HSP90B1P14625 803 aaKnown RBP14.14□□□□□ -0.15
VRK3-210ENST00000596121 GPBP1L1Q9HC44 474 aaPredicted RBP14.14□□□□□ -0.15
VRK3-210ENST00000596121 UTYO14607 1347 aa14.14□□□□□ -0.15
VRK3-210ENST00000596121 RTL9Q8NET4 1388 aa14.13□□□□□ -0.15
VRK3-210ENST00000596121 WTIPA6NIX2 430 aaPredicted RBP14.13□□□□□ -0.15
VRK3-210ENST00000596121 KIF3CO14782 793 aa14.13□□□□□ -0.15
VRK3-210ENST00000596121 FAM161AQ3B820 660 aa14.13□□□□□ -0.15
VRK3-210ENST00000596121 MPNDQ8N594 471 aa14.13□□□□□ -0.15
VRK3-210ENST00000596121 SUCLG2Q96I99 432 aa14.13□□□□□ -0.15
VRK3-210ENST00000596121 USP44Q9H0E7 712 aa14.13□□□□□ -0.15
VRK3-210ENST00000596121 DICER1Q9UPY3 1922 aaKnown RBP14.13□□□□□ -0.15
VRK3-210ENST00000596121 DUOX1Q9NRD9 1551 aa14.13□□□□□ -0.15
VRK3-210ENST00000596121 ZC3H4Q9UPT8 1303 aaKnown RBP14.13□□□□□ -0.15
VRK3-210ENST00000596121 POTECB2RU33 542 aa14.12□□□□□ -0.15
VRK3-210ENST00000596121 AOC3Q16853 763 aa14.12□□□□□ -0.15
VRK3-210ENST00000596121 GRIPAP1Q4V328 841 aa14.12□□□□□ -0.15
VRK3-210ENST00000596121 DPP8Q6V1X1 898 aaPredicted RBP14.12□□□□□ -0.15
VRK3-210ENST00000596121 TMC4Q7Z404 712 aa14.12□□□□□ -0.15
VRK3-210ENST00000596121 GPR101Q96P66 508 aaPredicted RBP14.12□□□□□ -0.15
VRK3-210ENST00000596121 C9orf78Q9NZ63 289 aaPredicted RBP14.12□□□□□ -0.15
VRK3-210ENST00000596121 POLLQ9UGP5 575 aa14.12□□□□□ -0.15
VRK3-210ENST00000596121 LRRC37AA6NMS7 1700 aa14.12□□□□□ -0.15
VRK3-210ENST00000596121 TIAM2Q8IVF5 1701 aa14.12□□□□□ -0.15
VRK3-210ENST00000596121 ZNF541Q9H0D2 1346 aa14.12□□□□□ -0.15
VRK3-210ENST00000596121 GLTPD2A6NH11 291 aa14.11□□□□□ -0.15
VRK3-210ENST00000596121 FZD9O00144 591 aa14.11□□□□□ -0.15
VRK3-210ENST00000596121 DDNO94850 711 aaPredicted RBP14.11□□□□□ -0.15
VRK3-210ENST00000596121 ITGA6P23229 1130 aa14.11□□□□□ -0.15
VRK3-210ENST00000596121 LMBR1LQ6UX01 489 aa14.11□□□□□ -0.15
VRK3-210ENST00000596121 ANKRD18AQ8IVF6 992 aa14.11□□□□□ -0.15
VRK3-210ENST00000596121 RRAGCQ9HB90 399 aa14.11□□□□□ -0.15
VRK3-210ENST00000596121 NSFL1CQ9UNZ2 370 aaKnown RBP14.11□□□□□ -0.15
VRK3-210ENST00000596121 PPIP5K2O43314 1243 aa14.1□□□□□ -0.15
VRK3-210ENST00000596121 LARGE2Q8N3Y3 721 aa14.1□□□□□ -0.15
VRK3-210ENST00000596121 ANKRD44Q8N8A2 993 aa14.1□□□□□ -0.15
VRK3-210ENST00000596121 TBC1D16Q8TBP0 767 aa14.1□□□□□ -0.15
VRK3-210ENST00000596121 ARHGAP45Q92619 1136 aa14.1□□□□□ -0.15
VRK3-210ENST00000596121 API5Q9BZZ5 524 aaKnown RBP14.1□□□□□ -0.15
VRK3-210ENST00000596121 MINPP1Q9UNW1 487 aa14.1□□□□□ -0.15
VRK3-210ENST00000596121 LTBP1Q14766 1721 aa14.1□□□□□ -0.15
VRK3-210ENST00000596121 MYH3P11055 1940 aa14.09□□□□□ -0.15
VRK3-210ENST00000596121 TRIM27P14373 513 aa14.09□□□□□ -0.15
VRK3-210ENST00000596121 KIAA2012Q0VF49 1180 aa14.09□□□□□ -0.15
VRK3-210ENST00000596121 ZNF594Q96JF6 807 aaPredicted RBP14.09□□□□□ -0.15
VRK3-210ENST00000596121 CDC5LQ99459 802 aaKnown RBP14.09□□□□□ -0.15
VRK3-210ENST00000596121 TMX4Q9H1E5 349 aaPredicted RBP14.09□□□□□ -0.15
VRK3-210ENST00000596121 BSDC1Q9NW68 430 aaPredicted RBP14.09□□□□□ -0.15
VRK3-210ENST00000596121 PODXL2Q9NZ53 605 aa14.09□□□□□ -0.15
VRK3-210ENST00000596121 RIMBP2O15034 1052 aa14.08□□□□□ -0.16
VRK3-210ENST00000596121 CCT4P50991 539 aaKnown RBP14.08□□□□□ -0.16
VRK3-210ENST00000596121 FRAT1Q92837 279 aaPredicted RBP14.08□□□□□ -0.16
VRK3-210ENST00000596121 BICC1Q9H694 974 aaKnown RBP14.08□□□□□ -0.16
VRK3-210ENST00000596121 KDM2BQ8NHM5 1336 aa14.08□□□□□ -0.16
VRK3-210ENST00000596121 C6orf229H3BNL8 230 aa14.07□□□□□ -0.16
VRK3-210ENST00000596121 RABL6Q3YEC7 729 aaPredicted RBP14.07□□□□□ -0.16
VRK3-210ENST00000596121 INTS3Q68E01 1043 aaKnown RBP14.07□□□□□ -0.16
VRK3-210ENST00000596121 ATF7IPQ6VMQ6 1270 aa14.07□□□□□ -0.16
VRK3-210ENST00000596121 SUPT20HQ8NEM7 779 aa14.07□□□□□ -0.16
VRK3-210ENST00000596121 VPS33BQ9H267 617 aa14.07□□□□□ -0.16
VRK3-210ENST00000596121 CHMP3Q9Y3E7 222 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms