RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 TMC4Q7Z404 712 aa19.04■□□□□ 0.64
UPF1-202ENST00000594243 DDX60Q8IY21 1712 aaKnown RBP19.04■□□□□ 0.64
UPF1-202ENST00000594243 TAOK3Q9H2K8 898 aa19.04■□□□□ 0.64
UPF1-202ENST00000594243 RNF181Q9P0P0 153 aa19.04■□□□□ 0.64
UPF1-202ENST00000594243 NOB1Q9ULX3 412 aaKnown RBP19.04■□□□□ 0.64
UPF1-202ENST00000594243 SP8Q8IXZ3 490 aa19.03■□□□□ 0.64
UPF1-202ENST00000594243 ATP6V0A2Q9Y487 856 aa19.03■□□□□ 0.64
UPF1-202ENST00000594243 CACNA1SQ13698 1873 aa19.03■□□□□ 0.64
UPF1-202ENST00000594243 LAMB2P55268 1798 aa19.02■□□□□ 0.64
UPF1-202ENST00000594243 FKBP4Q02790 459 aaKnown RBP eCLIP19.02■□□□□ 0.64
UPF1-202ENST00000594243 PLA2G12BQ9BX93 195 aa19.02■□□□□ 0.64
UPF1-202ENST00000594243 C9orf78Q9NZ63 289 aaPredicted RBP19.02■□□□□ 0.64
UPF1-202ENST00000594243 KIF16BQ96L93 1317 aa19.01■□□□□ 0.63
UPF1-202ENST00000594243 GRM8O00222 908 aa19.01■□□□□ 0.63
UPF1-202ENST00000594243 CASP7P55210 303 aa19.01■□□□□ 0.63
UPF1-202ENST00000594243 CTSWP56202 376 aa19.01■□□□□ 0.63
UPF1-202ENST00000594243 OLFM4Q6UX06 510 aa19.01■□□□□ 0.63
UPF1-202ENST00000594243 ARHGAP45Q92619 1136 aa19.01■□□□□ 0.63
UPF1-202ENST00000594243 API5Q9BZZ5 524 aaKnown RBP19.01■□□□□ 0.63
UPF1-202ENST00000594243 IPO8O15397 1037 aaKnown RBP19■□□□□ 0.63
UPF1-202ENST00000594243 RPS8P62241 208 aaKnown RBP19■□□□□ 0.63
UPF1-202ENST00000594243 TTLL11Q8NHH1 800 aa19■□□□□ 0.63
UPF1-202ENST00000594243 CELF1Q92879 486 aaKnown RBP19■□□□□ 0.63
UPF1-202ENST00000594243 PSMD1Q99460 953 aa19■□□□□ 0.63
UPF1-202ENST00000594243 FER1L6Q2WGJ9 1857 aa18.99■□□□□ 0.63
UPF1-202ENST00000594243 ZC3H4Q9UPT8 1303 aaKnown RBP18.99■□□□□ 0.63
UPF1-202ENST00000594243 CCT4P50991 539 aaKnown RBP18.98■□□□□ 0.63
UPF1-202ENST00000594243 PRELPP51888 382 aa18.98■□□□□ 0.63
UPF1-202ENST00000594243 CCDC85AQ96PX6 553 aaPredicted RBP18.98■□□□□ 0.63
UPF1-202ENST00000594243 CDC5LQ99459 802 aaKnown RBP18.98■□□□□ 0.63
UPF1-202ENST00000594243 SEC31BQ9NQW1 1179 aa18.98■□□□□ 0.63
UPF1-202ENST00000594243 BCAR3O75815 825 aa18.97■□□□□ 0.63
UPF1-202ENST00000594243 CSF1RP07333 972 aa18.97■□□□□ 0.63
UPF1-202ENST00000594243 ANKRD18AQ8IVF6 992 aa18.97■□□□□ 0.63
UPF1-202ENST00000594243 SUPT20HQ8NEM7 779 aa18.97■□□□□ 0.63
UPF1-202ENST00000594243 RTL9Q8NET4 1388 aa18.96■□□□□ 0.63
UPF1-202ENST00000594243 DPP8Q6V1X1 898 aaPredicted RBP18.96■□□□□ 0.63
UPF1-202ENST00000594243 MPNDQ8N594 471 aa18.96■□□□□ 0.63
UPF1-202ENST00000594243 VPS33BQ9H267 617 aa18.96■□□□□ 0.63
UPF1-202ENST00000594243 GREM2Q9H772 168 aa18.96■□□□□ 0.63
UPF1-202ENST00000594243 SBF1O95248 1867 aa18.96■□□□□ 0.63
UPF1-202ENST00000594243 UTYO14607 1347 aa18.96■□□□□ 0.63
UPF1-202ENST00000594243 SNED1Q8TER0 1413 aa18.95■□□□□ 0.62
UPF1-202ENST00000594243 IARSP41252 1262 aaKnown RBP18.95■□□□□ 0.62
UPF1-202ENST00000594243 FOXO4P98177 505 aa18.95■□□□□ 0.62
UPF1-202ENST00000594243 FRAT1Q92837 279 aaPredicted RBP18.95■□□□□ 0.62
UPF1-202ENST00000594243 GPBP1L1Q9HC44 474 aaPredicted RBP18.95■□□□□ 0.62
UPF1-202ENST00000594243 ZNF277Q9NRM2 450 aaPredicted RBP18.95■□□□□ 0.62
UPF1-202ENST00000594243 NBPF7P0C2Y1 421 aaPredicted RBP18.94■□□□□ 0.62
UPF1-202ENST00000594243 DPY19L2Q6NUT2 758 aa18.94■□□□□ 0.62
UPF1-202ENST00000594243 RTFDC1Q9BY42 306 aaPredicted RBP18.94■□□□□ 0.62
UPF1-202ENST00000594243 NSFL1CQ9UNZ2 370 aaKnown RBP18.94■□□□□ 0.62
UPF1-202ENST00000594243 ITGA6P23229 1130 aa18.93■□□□□ 0.62
UPF1-202ENST00000594243 ATF7IPQ6VMQ6 1270 aa18.93■□□□□ 0.62
UPF1-202ENST00000594243 ZNF526Q8TF50 670 aaPredicted RBP18.93■□□□□ 0.62
UPF1-202ENST00000594243 JDP2Q8WYK2 163 aa18.93■□□□□ 0.62
UPF1-202ENST00000594243 USP44Q9H0E7 712 aa18.93■□□□□ 0.62
UPF1-202ENST00000594243 KDM2BQ8NHM5 1336 aa18.93■□□□□ 0.62
UPF1-202ENST00000594243 ANKRD18BA2A2Z9 1011 aa18.92■□□□□ 0.62
UPF1-202ENST00000594243 IGHMBP2P38935 993 aaKnown RBP18.92■□□□□ 0.62
UPF1-202ENST00000594243 IFIT5Q13325 482 aaKnown RBP18.92■□□□□ 0.62
UPF1-202ENST00000594243 ZKSCAN2Q63HK3 967 aa18.92■□□□□ 0.62
UPF1-202ENST00000594243 LMBR1LQ6UX01 489 aa18.92■□□□□ 0.62
UPF1-202ENST00000594243 BSDC1Q9NW68 430 aaPredicted RBP18.92■□□□□ 0.62
UPF1-202ENST00000594243 CHMP3Q9Y3E7 222 aa18.92■□□□□ 0.62
UPF1-202ENST00000594243 TAF1P21675 1872 aa18.91■□□□□ 0.62
UPF1-202ENST00000594243 GLTPD2A6NH11 291 aa18.91■□□□□ 0.62
UPF1-202ENST00000594243 CCDC57Q2TAC2 916 aa18.91■□□□□ 0.62
UPF1-202ENST00000594243 FAM161AQ3B820 660 aa18.91■□□□□ 0.62
UPF1-202ENST00000594243 INTS3Q68E01 1043 aaKnown RBP18.91■□□□□ 0.62
UPF1-202ENST00000594243 SLC51AQ86UW1 340 aa18.91■□□□□ 0.62
UPF1-202ENST00000594243 SUCLG2Q96I99 432 aa18.91■□□□□ 0.62
UPF1-202ENST00000594243 MPHOSPH8Q99549 860 aa18.91■□□□□ 0.62
UPF1-202ENST00000594243 HDAC5Q9UQL6 1122 aa18.91■□□□□ 0.62
UPF1-202ENST00000594243 MYH3P11055 1940 aa18.9■□□□□ 0.62
UPF1-202ENST00000594243 TRIM27P14373 513 aa18.9■□□□□ 0.62
UPF1-202ENST00000594243 GPSM2P81274 684 aa18.9■□□□□ 0.62
UPF1-202ENST00000594243 EPHA10Q5JZY3 1008 aa18.9■□□□□ 0.62
UPF1-202ENST00000594243 LARGE2Q8N3Y3 721 aa18.9■□□□□ 0.62
UPF1-202ENST00000594243 PODXL2Q9NZ53 605 aa18.9■□□□□ 0.62
UPF1-202ENST00000594243 ANKIB1Q9P2G1 1089 aa18.9■□□□□ 0.62
UPF1-202ENST00000594243 CCDC88AQ3V6T2 1871 aa18.9■□□□□ 0.62
UPF1-202ENST00000594243 PPIP5K2O43314 1243 aa18.89■□□□□ 0.61
UPF1-202ENST00000594243 C1QTNF8P60827 252 aa18.89■□□□□ 0.61
UPF1-202ENST00000594243 EYA3Q99504 573 aa18.89■□□□□ 0.61
UPF1-202ENST00000594243 C6orf229H3BNL8 230 aa18.88■□□□□ 0.61
UPF1-202ENST00000594243 FZD9O00144 591 aa18.88■□□□□ 0.61
UPF1-202ENST00000594243 AOC3Q16853 763 aa18.88■□□□□ 0.61
UPF1-202ENST00000594243 WASHC4Q2M389 1173 aa18.88■□□□□ 0.61
UPF1-202ENST00000594243 KAZALD1Q96I82 304 aa18.88■□□□□ 0.61
UPF1-202ENST00000594243 BICC1Q9H694 974 aaKnown RBP18.88■□□□□ 0.61
UPF1-202ENST00000594243 MINPP1Q9UNW1 487 aa18.88■□□□□ 0.61
UPF1-202ENST00000594243 LRRC37AA6NMS7 1700 aa18.88■□□□□ 0.61
UPF1-202ENST00000594243 DICER1Q9UPY3 1922 aaKnown RBP18.88■□□□□ 0.61
UPF1-202ENST00000594243 COL4A1P02462 1669 aa18.87■□□□□ 0.61
UPF1-202ENST00000594243 UBTFL1P0CB47 393 aaPredicted RBP18.87■□□□□ 0.61
UPF1-202ENST00000594243 XDHP47989 1333 aa18.87■□□□□ 0.61
UPF1-202ENST00000594243 KIAA2012Q0VF49 1180 aa18.87■□□□□ 0.61
UPF1-202ENST00000594243 RABL6Q3YEC7 729 aaPredicted RBP18.87■□□□□ 0.61
UPF1-202ENST00000594243 TAF7LQ5H9L4 462 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms