RNA–Protein interactions for RNA: ENST00000593946.5

PNKP-203, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 1 (best)

Gene PNKP, Length 1,723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-203ENST00000593946 SETDB2Q96T68 719 aa25.61■■□□□ 1.69
PNKP-203ENST00000593946 STAP2Q9UGK3 403 aa25.61■■□□□ 1.69
PNKP-203ENST00000593946 HCLS1P14317 486 aaPredicted RBP25.6■■□□□ 1.69
PNKP-203ENST00000593946 ZNF827Q17R98 1081 aa25.6■■□□□ 1.69
PNKP-203ENST00000593946 CLASRPQ8N2M8 674 aaKnown RBP25.6■■□□□ 1.69
PNKP-203ENST00000593946 GSPT1P15170 499 aaKnown RBP25.6■■□□□ 1.69
PNKP-203ENST00000593946 IFIT5Q13325 482 aaKnown RBP25.6■■□□□ 1.69
PNKP-203ENST00000593946 NUTM1Q86Y26 1132 aa25.6■■□□□ 1.69
PNKP-203ENST00000593946 GREM2Q9H772 168 aa25.6■■□□□ 1.69
PNKP-203ENST00000593946 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.6■■□□□ 1.69
PNKP-203ENST00000593946 AOX1Q06278 1338 aa25.58■■□□□ 1.69
PNKP-203ENST00000593946 CIAO1O76071 339 aa25.58■■□□□ 1.69
PNKP-203ENST00000593946 ATG9AQ7Z3C6 839 aa25.58■■□□□ 1.69
PNKP-203ENST00000593946 ZNF594Q96JF6 807 aaPredicted RBP25.58■■□□□ 1.69
PNKP-203ENST00000593946 CCDC85AQ96PX6 553 aaPredicted RBP25.58■■□□□ 1.69
PNKP-203ENST00000593946 NYXQ9GZU5 481 aa25.58■■□□□ 1.69
PNKP-203ENST00000593946 FBXO3Q9UK99 471 aa25.58■■□□□ 1.69
PNKP-203ENST00000593946 LRP5O75197 1615 aa25.58■■□□□ 1.69
PNKP-203ENST00000593946 ITGA6P23229 1130 aa25.57■■□□□ 1.68
PNKP-203ENST00000593946 EYA2O00167 538 aa25.57■■□□□ 1.68
PNKP-203ENST00000593946 GYS1P13807 737 aa25.57■■□□□ 1.68
PNKP-203ENST00000593946 ERFEQ4G0M1 354 aa25.57■■□□□ 1.68
PNKP-203ENST00000593946 CAMKK2Q96RR4 588 aa25.57■■□□□ 1.68
PNKP-203ENST00000593946 TFCP2L1Q9NZI6 479 aa25.57■■□□□ 1.68
PNKP-203ENST00000593946 CARMIL3Q8ND23 1372 aa25.56■■□□□ 1.68
PNKP-203ENST00000593946 IL15P40933 162 aaPredicted RBP25.56■■□□□ 1.68
PNKP-203ENST00000593946 RBM19Q9Y4C8 960 aaKnown RBP25.56■■□□□ 1.68
PNKP-203ENST00000593946 RTL9Q8NET4 1388 aa25.56■■□□□ 1.68
PNKP-203ENST00000593946 ANKRD18BA2A2Z9 1011 aa25.55■■□□□ 1.68
PNKP-203ENST00000593946 NBPF5PQ86XG9 351 aaPredicted RBP25.55■■□□□ 1.68
PNKP-203ENST00000593946 AK9Q5TCS8 1911 aa25.55■■□□□ 1.68
PNKP-203ENST00000593946 QSER1Q2KHR3 1735 aa25.55■■□□□ 1.68
PNKP-203ENST00000593946 SPEF2Q9C093 1822 aa25.55■■□□□ 1.68
PNKP-203ENST00000593946 TFCP2Q12800 502 aa25.54■■□□□ 1.68
PNKP-203ENST00000593946 NFIXQ14938 502 aa25.54■■□□□ 1.68
PNKP-203ENST00000593946 LRRC24Q50LG9 513 aa25.54■■□□□ 1.68
PNKP-203ENST00000593946 SLC10A5Q5PT55 438 aa25.54■■□□□ 1.68
PNKP-203ENST00000593946 TSHZ3Q63HK5 1081 aa25.54■■□□□ 1.68
PNKP-203ENST00000593946 AACSQ86V21 672 aa25.54■■□□□ 1.68
PNKP-203ENST00000593946 EAF2Q96CJ1 260 aaPredicted RBP25.54■■□□□ 1.68
PNKP-203ENST00000593946 ABCC12Q96J65 1359 aa25.54■■□□□ 1.68
PNKP-203ENST00000593946 IFIT2P09913 472 aaKnown RBP25.53■■□□□ 1.68
PNKP-203ENST00000593946 EN1Q05925 392 aaPredicted RBP25.53■■□□□ 1.68
PNKP-203ENST00000593946 EZH2Q15910 746 aaKnown RBP25.53■■□□□ 1.68
PNKP-203ENST00000593946 CCDC152Q4G0S7 254 aa25.53■■□□□ 1.68
PNKP-203ENST00000593946 TAF7LQ5H9L4 462 aa25.53■■□□□ 1.68
PNKP-203ENST00000593946 TPTE2Q6XPS3 522 aa25.53■■□□□ 1.68
PNKP-203ENST00000593946 PUS3Q9BZE2 481 aaKnown RBP25.53■■□□□ 1.68
PNKP-203ENST00000593946 TTC41PQ6P2S7 1318 aa25.53■■□□□ 1.68
PNKP-203ENST00000593946 GTF2E1P29083 439 aaPredicted RBP25.51■■□□□ 1.68
PNKP-203ENST00000593946 TNNI3KQ59H18 835 aa25.51■■□□□ 1.68
PNKP-203ENST00000593946 FLAD1Q8NFF5 587 aa25.51■■□□□ 1.68
PNKP-203ENST00000593946 PI4K2BQ8TCG2 481 aa25.51■■□□□ 1.68
PNKP-203ENST00000593946 FPGT-TNNI3KV9GXZ4 949 aa25.51■■□□□ 1.68
PNKP-203ENST00000593946 TNRC6CQ9HCJ0 1690 aaKnown RBP25.5■■□□□ 1.67
PNKP-203ENST00000593946 SDSP20132 328 aa25.5■■□□□ 1.67
PNKP-203ENST00000593946 SF3B3Q15393 1217 aaKnown RBP25.5■■□□□ 1.67
PNKP-203ENST00000593946 COL23A1Q86Y22 540 aaPredicted RBP25.5■■□□□ 1.67
PNKP-203ENST00000593946 GPR108Q9NPR9 543 aa25.5■■□□□ 1.67
PNKP-203ENST00000593946 TAF1P21675 1872 aa25.5■■□□□ 1.67
PNKP-203ENST00000593946 RIC1Q4ADV7 1423 aa25.49■■□□□ 1.67
PNKP-203ENST00000593946 RIPOR2Q9Y4F9 1068 aa25.49■■□□□ 1.67
PNKP-203ENST00000593946 ZNF609O15014 1411 aa25.49■■□□□ 1.67
PNKP-203ENST00000593946 TM4SF1P30408 202 aa25.49■■□□□ 1.67
PNKP-203ENST00000593946 SF3B2Q13435 895 aaKnown RBP25.49■■□□□ 1.67
PNKP-203ENST00000593946 LDHAL6AQ6ZMR3 332 aa25.49■■□□□ 1.67
PNKP-203ENST00000593946 C3orf67Q6ZVT6 689 aa25.49■■□□□ 1.67
PNKP-203ENST00000593946 GPATCH3Q96I76 525 aa25.49■■□□□ 1.67
PNKP-203ENST00000593946 CCDC8Q9H0W5 538 aaPredicted RBP25.49■■□□□ 1.67
PNKP-203ENST00000593946 ECHDC1Q9NTX5 307 aa25.49■■□□□ 1.67
PNKP-203ENST00000593946 TLR7Q9NYK1 1049 aaKnown RBP25.49■■□□□ 1.67
PNKP-203ENST00000593946 BAG6P46379 1132 aa25.48■■□□□ 1.67
PNKP-203ENST00000593946 PNPLA7Q6ZV29 1317 aa25.48■■□□□ 1.67
PNKP-203ENST00000593946 SEC31BQ9NQW1 1179 aa25.47■■□□□ 1.67
PNKP-203ENST00000593946 COL4A1P02462 1669 aa25.47■■□□□ 1.67
PNKP-203ENST00000593946 ANO8Q9HCE9 1232 aaPredicted RBP25.46■■□□□ 1.67
PNKP-203ENST00000593946 CEP126Q9P2H0 1117 aa25.46■■□□□ 1.67
PNKP-203ENST00000593946 ERC2O15083 957 aa25.46■■□□□ 1.67
PNKP-203ENST00000593946 CDC45O75419 566 aa25.46■■□□□ 1.67
PNKP-203ENST00000593946 GLRX3O76003 335 aaKnown RBP25.46■■□□□ 1.67
PNKP-203ENST00000593946 SEC24BO95487 1268 aa25.46■■□□□ 1.67
PNKP-203ENST00000593946 CNBD1Q8NA66 436 aa25.46■■□□□ 1.67
PNKP-203ENST00000593946 DBNLQ9UJU6 430 aaKnown RBP25.46■■□□□ 1.67
PNKP-203ENST00000593946 NRXN2Q9P2S2 1712 aa25.45■■□□□ 1.67
PNKP-203ENST00000593946 A0A1B0GUL6 1792 aa25.45■■□□□ 1.67
PNKP-203ENST00000593946 TBC1D9Q6ZT07 1266 aa25.45■■□□□ 1.66
PNKP-203ENST00000593946 CNNM1Q9NRU3 951 aa25.45■■□□□ 1.66
PNKP-203ENST00000593946 NLRP3Q96P20 1036 aa25.44■■□□□ 1.66
PNKP-203ENST00000593946 DDR1Q08345 913 aa25.43■■□□□ 1.66
PNKP-203ENST00000593946 SLC15A2Q16348 729 aa25.43■■□□□ 1.66
PNKP-203ENST00000593946 PRR5LQ6MZQ0 368 aa25.43■■□□□ 1.66
PNKP-203ENST00000593946 POLRMTO00411 1230 aaKnown RBP25.43■■□□□ 1.66
PNKP-203ENST00000593946 NPHP1O15259 732 aa25.43■■□□□ 1.66
PNKP-203ENST00000593946 DEFB132Q7Z7B7 95 aa25.43■■□□□ 1.66
PNKP-203ENST00000593946 NLGN1Q8N2Q7 840 aa25.43■■□□□ 1.66
PNKP-203ENST00000593946 CCDC24Q8N4L8 307 aa25.43■■□□□ 1.66
PNKP-203ENST00000593946 VGLL2Q8N8G2 317 aa25.43■■□□□ 1.66
PNKP-203ENST00000593946 CDC5LQ99459 802 aaKnown RBP25.43■■□□□ 1.66
PNKP-203ENST00000593946 ARAP2Q8WZ64 1704 aa25.43■■□□□ 1.66
PNKP-203ENST00000593946 MSH5O43196 834 aa25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms