RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 COL4A5P29400 1685 aa20.04■□□□□ 0.8
LIG3-215ENST00000592690 ATP6V0A2Q9Y487 856 aa20.04■□□□□ 0.8
LIG3-215ENST00000592690 LTBP1Q14766 1721 aa20.03■□□□□ 0.8
LIG3-215ENST00000592690 WDR90Q96KV7 1748 aa20.03■□□□□ 0.8
LIG3-215ENST00000592690 PDE8AO60658 829 aa20.03■□□□□ 0.8
LIG3-215ENST00000592690 GCKRQ14397 625 aa20.03■□□□□ 0.8
LIG3-215ENST00000592690 MRPL50Q8N5N7 158 aaKnown RBP20.03■□□□□ 0.8
LIG3-215ENST00000592690 CELF1Q92879 486 aaKnown RBP20.03■□□□□ 0.8
LIG3-215ENST00000592690 PSMD1Q99460 953 aa20.03■□□□□ 0.8
LIG3-215ENST00000592690 DUOX1Q9NRD9 1551 aa20.03■□□□□ 0.8
LIG3-215ENST00000592690 KIF3CO14782 793 aa20.02■□□□□ 0.8
LIG3-215ENST00000592690 BBOX1O75936 387 aa20.02■□□□□ 0.8
LIG3-215ENST00000592690 UBE3BQ7Z3V4 1068 aa20.02■□□□□ 0.8
LIG3-215ENST00000592690 LINS1Q8NG48 757 aa20.02■□□□□ 0.8
LIG3-215ENST00000592690 SSH1Q8WYL5 1049 aa20.02■□□□□ 0.8
LIG3-215ENST00000592690 KDM2BQ8NHM5 1336 aa20.02■□□□□ 0.79
LIG3-215ENST00000592690 HSP90B1P14625 803 aaKnown RBP20.01■□□□□ 0.79
LIG3-215ENST00000592690 IARSP41252 1262 aaKnown RBP20.01■□□□□ 0.79
LIG3-215ENST00000592690 HNRNPUQ00839 825 aaKnown RBP eCLIP20.01■□□□□ 0.79
LIG3-215ENST00000592690 SP8Q8IXZ3 490 aa20.01■□□□□ 0.79
LIG3-215ENST00000592690 CCDC85AQ96PX6 553 aaPredicted RBP20.01■□□□□ 0.79
LIG3-215ENST00000592690 BCL2L13Q9BXK5 485 aa20.01■□□□□ 0.79
LIG3-215ENST00000592690 GLTPD2A6NH11 291 aa20■□□□□ 0.79
LIG3-215ENST00000592690 H7C1W4 665 aa20■□□□□ 0.79
LIG3-215ENST00000592690 C1QTNF8P60827 252 aa20■□□□□ 0.79
LIG3-215ENST00000592690 GRIPAP1Q4V328 841 aa20■□□□□ 0.79
LIG3-215ENST00000592690 BEND3Q5T5X7 828 aa20■□□□□ 0.79
LIG3-215ENST00000592690 SEC31BQ9NQW1 1179 aa20■□□□□ 0.79
LIG3-215ENST00000592690 CASP7P55210 303 aa19.99■□□□□ 0.79
LIG3-215ENST00000592690 CTSWP56202 376 aa19.99■□□□□ 0.79
LIG3-215ENST00000592690 CCDC152Q4G0S7 254 aa19.99■□□□□ 0.79
LIG3-215ENST00000592690 TMX4Q9H1E5 349 aaPredicted RBP19.98■□□□□ 0.79
LIG3-215ENST00000592690 ALDH1L2Q3SY69 923 aa19.97■□□□□ 0.79
LIG3-215ENST00000592690 SLC4A10Q6U841 1118 aa19.97■□□□□ 0.79
LIG3-215ENST00000592690 TMC4Q7Z404 712 aa19.97■□□□□ 0.79
LIG3-215ENST00000592690 TTLL11Q8NHH1 800 aa19.97■□□□□ 0.79
LIG3-215ENST00000592690 RRAGCQ9HB90 399 aa19.97■□□□□ 0.79
LIG3-215ENST00000592690 ZNF541Q9H0D2 1346 aa19.97■□□□□ 0.79
LIG3-215ENST00000592690 RPS8P62241 208 aaKnown RBP19.96■□□□□ 0.79
LIG3-215ENST00000592690 DPP8Q6V1X1 898 aaPredicted RBP19.96■□□□□ 0.79
LIG3-215ENST00000592690 MPNDQ8N594 471 aa19.96■□□□□ 0.79
LIG3-215ENST00000592690 RTFDC1Q9BY42 306 aaPredicted RBP19.96■□□□□ 0.79
LIG3-215ENST00000592690 SMC4Q9NTJ3 1288 aa19.96■□□□□ 0.79
LIG3-215ENST00000592690 SCN4AP35499 1836 aa19.96■□□□□ 0.79
LIG3-215ENST00000592690 PTPRCP08575 1304 aa19.96■□□□□ 0.79
LIG3-215ENST00000592690 A0A1B0GUL6 1792 aa19.95■□□□□ 0.78
LIG3-215ENST00000592690 CT47B1P0C2W7 299 aaPredicted RBP19.95■□□□□ 0.78
LIG3-215ENST00000592690 DPY19L2Q6NUT2 758 aa19.95■□□□□ 0.78
LIG3-215ENST00000592690 PLA2G12BQ9BX93 195 aa19.95■□□□□ 0.78
LIG3-215ENST00000592690 GREM2Q9H772 168 aa19.95■□□□□ 0.78
LIG3-215ENST00000592690 PPIP5K2O43314 1243 aa19.94■□□□□ 0.78
LIG3-215ENST00000592690 DDNO94850 711 aaPredicted RBP19.94■□□□□ 0.78
LIG3-215ENST00000592690 AOC3Q16853 763 aa19.94■□□□□ 0.78
LIG3-215ENST00000592690 LARGE2Q8N3Y3 721 aa19.94■□□□□ 0.78
LIG3-215ENST00000592690 RTL9Q8NET4 1388 aa19.94■□□□□ 0.78
LIG3-215ENST00000592690 FZD9O00144 591 aa19.93■□□□□ 0.78
LIG3-215ENST00000592690 ALDH1L1O75891 902 aa19.93■□□□□ 0.78
LIG3-215ENST00000592690 GPSM2P81274 684 aa19.93■□□□□ 0.78
LIG3-215ENST00000592690 SUPT20HQ8NEM7 779 aa19.93■□□□□ 0.78
LIG3-215ENST00000592690 JDP2Q8WYK2 163 aa19.93■□□□□ 0.78
LIG3-215ENST00000592690 SRCIN1Q9C0H9 1055 aa19.93■□□□□ 0.78
LIG3-215ENST00000592690 POTECB2RU33 542 aa19.92■□□□□ 0.78
LIG3-215ENST00000592690 GRM8O00222 908 aa19.92■□□□□ 0.78
LIG3-215ENST00000592690 NSFL1CQ9UNZ2 370 aaKnown RBP19.92■□□□□ 0.78
LIG3-215ENST00000592690 TOMM70O94826 608 aa19.91■□□□□ 0.78
LIG3-215ENST00000592690 FAM161AQ3B820 660 aa19.91■□□□□ 0.78
LIG3-215ENST00000592690 ANKRD18AQ8IVF6 992 aa19.91■□□□□ 0.78
LIG3-215ENST00000592690 NIM1KQ8IY84 436 aa19.91■□□□□ 0.78
LIG3-215ENST00000592690 CSF1RP07333 972 aa19.9■□□□□ 0.78
LIG3-215ENST00000592690 VEGFAP15692 232 aaPredicted RBP19.9■□□□□ 0.78
LIG3-215ENST00000592690 RARSP54136 660 aaKnown RBP19.9■□□□□ 0.78
LIG3-215ENST00000592690 FOXO4P98177 505 aa19.9■□□□□ 0.78
LIG3-215ENST00000592690 KIAA2012Q0VF49 1180 aa19.9■□□□□ 0.78
LIG3-215ENST00000592690 CDC5LQ99459 802 aaKnown RBP19.9■□□□□ 0.78
LIG3-215ENST00000592690 VPS33BQ9H267 617 aa19.9■□□□□ 0.78
LIG3-215ENST00000592690 C9orf78Q9NZ63 289 aaPredicted RBP19.9■□□□□ 0.78
LIG3-215ENST00000592690 POLLQ9UGP5 575 aa19.9■□□□□ 0.78
LIG3-215ENST00000592690 ZBED9Q6R2W3 1325 aa19.9■□□□□ 0.78
LIG3-215ENST00000592690 SCN9AQ15858 1988 aa19.9■□□□□ 0.78
LIG3-215ENST00000592690 EPHA10Q5JZY3 1008 aa19.89■□□□□ 0.77
LIG3-215ENST00000592690 C16orf71Q8IYS4 520 aaPredicted RBP19.89■□□□□ 0.77
LIG3-215ENST00000592690 C6orf229H3BNL8 230 aa19.88■□□□□ 0.77
LIG3-215ENST00000592690 ITGA6P23229 1130 aa19.88■□□□□ 0.77
LIG3-215ENST00000592690 EIF6P56537 245 aaKnown RBP19.88■□□□□ 0.77
LIG3-215ENST00000592690 L3MBTL3Q96JM7 780 aaPredicted RBP19.88■□□□□ 0.77
LIG3-215ENST00000592690 GPR101Q96P66 508 aaPredicted RBP19.88■□□□□ 0.77
LIG3-215ENST00000592690 NOB1Q9ULX3 412 aaKnown RBP19.88■□□□□ 0.77
LIG3-215ENST00000592690 PSME4Q14997 1843 aa19.88■□□□□ 0.77
LIG3-215ENST00000592690 NBPF7P0C2Y1 421 aaPredicted RBP19.87■□□□□ 0.77
LIG3-215ENST00000592690 BRPF1P55201 1214 aaPredicted RBP19.87■□□□□ 0.77
LIG3-215ENST00000592690 TBC1D16Q8TBP0 767 aa19.87■□□□□ 0.77
LIG3-215ENST00000592690 PODXL2Q9NZ53 605 aa19.87■□□□□ 0.77
LIG3-215ENST00000592690 UTYO14607 1347 aa19.86■□□□□ 0.77
LIG3-215ENST00000592690 RIMBP2O15034 1052 aa19.86■□□□□ 0.77
LIG3-215ENST00000592690 GPC2Q8N158 579 aa19.86■□□□□ 0.77
LIG3-215ENST00000592690 RBM46Q8TBY0 533 aaKnown RBP19.86■□□□□ 0.77
LIG3-215ENST00000592690 SUCLG2Q96I99 432 aa19.86■□□□□ 0.77
LIG3-215ENST00000592690 BSDC1Q9NW68 430 aaPredicted RBP19.86■□□□□ 0.77
LIG3-215ENST00000592690 ANKIB1Q9P2G1 1089 aa19.86■□□□□ 0.77
LIG3-215ENST00000592690 ZNRF3Q9ULT6 936 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms