RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 GPC2Q8N158 579 aa14.04□□□□□ -0.16
LIG3-214ENST00000592244 PDE8AO60658 829 aa14.03□□□□□ -0.16
LIG3-214ENST00000592244 LMOD1P29536 600 aaPredicted RBP14.03□□□□□ -0.16
LIG3-214ENST00000592244 FLIIQ13045 1269 aa14.03□□□□□ -0.16
LIG3-214ENST00000592244 FKBP5Q13451 457 aaPredicted RBP14.03□□□□□ -0.16
LIG3-214ENST00000592244 RTFDC1Q9BY42 306 aaPredicted RBP14.03□□□□□ -0.16
LIG3-214ENST00000592244 HACL1Q9UJ83 578 aa14.03□□□□□ -0.16
LIG3-214ENST00000592244 ANKRD36CQ5JPF3 1778 aa14.02□□□□□ -0.16
LIG3-214ENST00000592244 TIAM2Q8IVF5 1701 aa14.02□□□□□ -0.16
LIG3-214ENST00000592244 RPS8P62241 208 aaKnown RBP14.02□□□□□ -0.17
LIG3-214ENST00000592244 EXOSC9Q06265 439 aaKnown RBP14.02□□□□□ -0.17
LIG3-214ENST00000592244 PNMA8AQ86V59 439 aaPredicted RBP14.02□□□□□ -0.17
LIG3-214ENST00000592244 ZNF428Q96B54 188 aa14.02□□□□□ -0.17
LIG3-214ENST00000592244 VAMP4O75379 141 aa14.01□□□□□ -0.17
LIG3-214ENST00000592244 CHADLQ6NUI6 762 aa14.01□□□□□ -0.17
LIG3-214ENST00000592244 EYA3Q99504 573 aa14.01□□□□□ -0.17
LIG3-214ENST00000592244 GJA3Q9Y6H8 435 aa14.01□□□□□ -0.17
LIG3-214ENST00000592244 SNED1Q8TER0 1413 aa14□□□□□ -0.17
LIG3-214ENST00000592244 CACNA1SQ13698 1873 aa14□□□□□ -0.17
LIG3-214ENST00000592244 CDHR2Q9BYE9 1310 aa14□□□□□ -0.17
LIG3-214ENST00000592244 ZNF541Q9H0D2 1346 aa14□□□□□ -0.17
LIG3-214ENST00000592244 POTECB2RU33 542 aa14□□□□□ -0.17
LIG3-214ENST00000592244 CCER2I3L3R5 266 aa14□□□□□ -0.17
LIG3-214ENST00000592244 AOC3Q16853 763 aa14□□□□□ -0.17
LIG3-214ENST00000592244 LDHDQ86WU2 507 aa14□□□□□ -0.17
LIG3-214ENST00000592244 DNAAF4Q8WXU2 420 aa14□□□□□ -0.17
LIG3-214ENST00000592244 CDC5LQ99459 802 aaKnown RBP14□□□□□ -0.17
LIG3-214ENST00000592244 TAF1DQ9H5J8 278 aaPredicted RBP14□□□□□ -0.17
LIG3-214ENST00000592244 ZNRF3Q9ULT6 936 aa14□□□□□ -0.17
LIG3-214ENST00000592244 NSFL1CQ9UNZ2 370 aaKnown RBP14□□□□□ -0.17
LIG3-214ENST00000592244 WDR90Q96KV7 1748 aa13.99□□□□□ -0.17
LIG3-214ENST00000592244 NEURL1BA8MQ27 555 aa13.99□□□□□ -0.17
LIG3-214ENST00000592244 E9PSI1 815 aa13.99□□□□□ -0.17
LIG3-214ENST00000592244 C6orf229H3BNL8 230 aa13.99□□□□□ -0.17
LIG3-214ENST00000592244 EPHX2P34913 555 aa13.99□□□□□ -0.17
LIG3-214ENST00000592244 KIAA2012Q0VF49 1180 aa13.99□□□□□ -0.17
LIG3-214ENST00000592244 TNIP1Q15025 636 aa13.99□□□□□ -0.17
LIG3-214ENST00000592244 WASHC4Q2M389 1173 aa13.99□□□□□ -0.17
LIG3-214ENST00000592244 EAPPQ56P03 285 aaPredicted RBP13.99□□□□□ -0.17
LIG3-214ENST00000592244 ANKRD18AQ8IVF6 992 aa13.99□□□□□ -0.17
LIG3-214ENST00000592244 LINS1Q8NG48 757 aa13.99□□□□□ -0.17
LIG3-214ENST00000592244 DICER1Q9UPY3 1922 aaKnown RBP13.99□□□□□ -0.17
LIG3-214ENST00000592244 G3V3G9 751 aa13.98□□□□□ -0.17
LIG3-214ENST00000592244 IGKV5-2P06315 115 aa13.98□□□□□ -0.17
LIG3-214ENST00000592244 CTSWP56202 376 aa13.98□□□□□ -0.17
LIG3-214ENST00000592244 DCAF8Q5TAQ9 597 aa13.98□□□□□ -0.17
LIG3-214ENST00000592244 G2E3Q7L622 706 aa13.98□□□□□ -0.17
LIG3-214ENST00000592244 CELF1Q92879 486 aaKnown RBP13.98□□□□□ -0.17
LIG3-214ENST00000592244 ANKIB1Q9P2G1 1089 aa13.98□□□□□ -0.17
LIG3-214ENST00000592244 CLEC11AQ9Y240 323 aa13.98□□□□□ -0.17
LIG3-214ENST00000592244 CWF19L2Q2TBE0 894 aaKnown RBP13.97□□□□□ -0.17
LIG3-214ENST00000592244 CCDC88AQ3V6T2 1871 aa13.97□□□□□ -0.17
LIG3-214ENST00000592244 GCKRQ14397 625 aa13.96□□□□□ -0.17
LIG3-214ENST00000592244 CIAPIN1Q6FI81 312 aa13.96□□□□□ -0.17
LIG3-214ENST00000592244 UBE3BQ7Z3V4 1068 aa13.96□□□□□ -0.17
LIG3-214ENST00000592244 ZC3H12CQ9C0D7 883 aaKnown RBP13.96□□□□□ -0.17
LIG3-214ENST00000592244 ZNF521Q96K83 1311 aa13.95□□□□□ -0.18
LIG3-214ENST00000592244 H7C1W4 665 aa13.95□□□□□ -0.18
LIG3-214ENST00000592244 JARID2Q92833 1246 aaPredicted RBP13.95□□□□□ -0.18
LIG3-214ENST00000592244 BCL2L13Q9BXK5 485 aa13.95□□□□□ -0.18
LIG3-214ENST00000592244 SPINK5Q9NQ38 1064 aaPredicted RBP13.95□□□□□ -0.18
LIG3-214ENST00000592244 PODXL2Q9NZ53 605 aa13.95□□□□□ -0.18
LIG3-214ENST00000592244 GGA1Q9UJY5 639 aa13.95□□□□□ -0.18
LIG3-214ENST00000592244 CEP350Q5VT06 3117 aa13.95□□□□□ -0.18
LIG3-214ENST00000592244 UFL1O94874 794 aa13.94□□□□□ -0.18
LIG3-214ENST00000592244 IGHMBP2P38935 993 aaKnown RBP13.94□□□□□ -0.18
LIG3-214ENST00000592244 GPSM2P81274 684 aa13.94□□□□□ -0.18
LIG3-214ENST00000592244 CXCL9Q07325 125 aa13.94□□□□□ -0.18
LIG3-214ENST00000592244 USP50Q70EL3 339 aaPredicted RBP13.94□□□□□ -0.18
LIG3-214ENST00000592244 TTLL11Q8NHH1 800 aa13.94□□□□□ -0.18
LIG3-214ENST00000592244 CCDC85AQ96PX6 553 aaPredicted RBP13.94□□□□□ -0.18
LIG3-214ENST00000592244 PLA2G12BQ9BX93 195 aa13.94□□□□□ -0.18
LIG3-214ENST00000592244 SEC31BQ9NQW1 1179 aa13.94□□□□□ -0.18
LIG3-214ENST00000592244 RTL9Q8NET4 1388 aa13.94□□□□□ -0.18
LIG3-214ENST00000592244 XDHP47989 1333 aa13.93□□□□□ -0.18
LIG3-214ENST00000592244 ATP2B4P23634 1241 aa13.93□□□□□ -0.18
LIG3-214ENST00000592244 TBC1D16Q8TBP0 767 aa13.93□□□□□ -0.18
LIG3-214ENST00000592244 MPHOSPH8Q99549 860 aa13.93□□□□□ -0.18
LIG3-214ENST00000592244 ADARB2Q9NS39 739 aaKnown RBP13.93□□□□□ -0.18
LIG3-214ENST00000592244 BSDC1Q9NW68 430 aaPredicted RBP13.93□□□□□ -0.18
LIG3-214ENST00000592244 SCN4AP35499 1836 aa13.92□□□□□ -0.18
LIG3-214ENST00000592244 H7C1D1 291 aa13.92□□□□□ -0.18
LIG3-214ENST00000592244 RIMBP2O15034 1052 aa13.92□□□□□ -0.18
LIG3-214ENST00000592244 RAD17O75943 681 aa13.92□□□□□ -0.18
LIG3-214ENST00000592244 SCNN1DP51172 638 aa13.92□□□□□ -0.18
LIG3-214ENST00000592244 KLRG1Q96E93 195 aa13.92□□□□□ -0.18
LIG3-214ENST00000592244 GREM2Q9H772 168 aa13.92□□□□□ -0.18
LIG3-214ENST00000592244 CREBZFQ9NS37 354 aa13.92□□□□□ -0.18
LIG3-214ENST00000592244 C9orf78Q9NZ63 289 aaPredicted RBP13.92□□□□□ -0.18
LIG3-214ENST00000592244 GPRC5DQ9NZD1 345 aa13.92□□□□□ -0.18
LIG3-214ENST00000592244 POLLQ9UGP5 575 aa13.92□□□□□ -0.18
LIG3-214ENST00000592244 DDX60Q8IY21 1712 aaKnown RBP13.91□□□□□ -0.18
LIG3-214ENST00000592244 ALDH1L1O75891 902 aa13.91□□□□□ -0.18
LIG3-214ENST00000592244 POTEIP0CG38 1075 aa13.91□□□□□ -0.18
LIG3-214ENST00000592244 POTEJP0CG39 1038 aa13.91□□□□□ -0.18
LIG3-214ENST00000592244 RPS12P25398 132 aaKnown RBP13.91□□□□□ -0.18
LIG3-214ENST00000592244 EPS15P42566 896 aa13.91□□□□□ -0.18
LIG3-214ENST00000592244 GMPSP49915 693 aaPredicted RBP13.91□□□□□ -0.18
LIG3-214ENST00000592244 SLFN5Q08AF3 891 aa13.91□□□□□ -0.18
LIG3-214ENST00000592244 BEND3Q5T5X7 828 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms