RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 LMOD1P29536 600 aaPredicted RBP18.55■□□□□ 0.56
VMP1-206ENST00000587945 TRIM28Q13263 835 aaKnown RBP18.55■□□□□ 0.56
VMP1-206ENST00000587945 CNTROBQ8N137 903 aa18.55■□□□□ 0.56
VMP1-206ENST00000587945 SUPT20HQ8NEM7 779 aa18.55■□□□□ 0.56
VMP1-206ENST00000587945 CELF1Q92879 486 aaKnown RBP18.55■□□□□ 0.56
VMP1-206ENST00000587945 TSR2Q969E8 191 aaKnown RBP18.55■□□□□ 0.56
VMP1-206ENST00000587945 MYD88Q99836 296 aa18.55■□□□□ 0.56
VMP1-206ENST00000587945 CXCL9Q07325 125 aa18.54■□□□□ 0.56
VMP1-206ENST00000587945 SF3B3Q15393 1217 aaKnown RBP18.54■□□□□ 0.56
VMP1-206ENST00000587945 VPS33BQ9H267 617 aa18.54■□□□□ 0.56
VMP1-206ENST00000587945 ZNRF3Q9ULT6 936 aa18.54■□□□□ 0.56
VMP1-206ENST00000587945 HSPA1AP0DMV8 641 aaKnown RBP18.53■□□□□ 0.56
VMP1-206ENST00000587945 HSPA1BP0DMV9 641 aaKnown RBP18.53■□□□□ 0.56
VMP1-206ENST00000587945 KIAA2012Q0VF49 1180 aa18.53■□□□□ 0.56
VMP1-206ENST00000587945 JARID2Q92833 1246 aaPredicted RBP18.53■□□□□ 0.56
VMP1-206ENST00000587945 PCNTO95613 3336 aa18.52■□□□□ 0.56
VMP1-206ENST00000587945 SCN4AP35499 1836 aa18.52■□□□□ 0.56
VMP1-206ENST00000587945 TMEM88BA6NKF7 163 aa18.52■□□□□ 0.56
VMP1-206ENST00000587945 ZEB1P37275 1124 aaPredicted RBP18.52■□□□□ 0.56
VMP1-206ENST00000587945 COL13A1Q5TAT6 717 aaPredicted RBP18.52■□□□□ 0.56
VMP1-206ENST00000587945 CCDC30Q5VVM6 783 aa18.52■□□□□ 0.56
VMP1-206ENST00000587945 WWC1Q8IX03 1113 aa18.52■□□□□ 0.56
VMP1-206ENST00000587945 ZBTB38Q8NAP3 1195 aaPredicted RBP18.52■□□□□ 0.56
VMP1-206ENST00000587945 ANKRD36CQ5JPF3 1778 aa18.51■□□□□ 0.55
VMP1-206ENST00000587945 RAD17O75943 681 aa18.51■□□□□ 0.55
VMP1-206ENST00000587945 TMC4Q7Z404 712 aa18.51■□□□□ 0.55
VMP1-206ENST00000587945 GMPSP49915 693 aaPredicted RBP18.5■□□□□ 0.55
VMP1-206ENST00000587945 FMR1Q06787 632 aaKnown RBP eCLIP18.5■□□□□ 0.55
VMP1-206ENST00000587945 CCDC27Q2M243 656 aa18.5■□□□□ 0.55
VMP1-206ENST00000587945 CIAPIN1Q6FI81 312 aa18.5■□□□□ 0.55
VMP1-206ENST00000587945 MRS2Q9HD23 443 aa18.5■□□□□ 0.55
VMP1-206ENST00000587945 GPRC5DQ9NZD1 345 aa18.5■□□□□ 0.55
VMP1-206ENST00000587945 NSFL1CQ9UNZ2 370 aaKnown RBP18.5■□□□□ 0.55
VMP1-206ENST00000587945 CNTNAP1P78357 1384 aa18.5■□□□□ 0.55
VMP1-206ENST00000587945 LTBP1Q14766 1721 aa18.49■□□□□ 0.55
VMP1-206ENST00000587945 ZNF316A6NFI3 1004 aaPredicted RBP18.49■□□□□ 0.55
VMP1-206ENST00000587945 YDJCA8MPS7 323 aa18.49■□□□□ 0.55
VMP1-206ENST00000587945 GPSM2P81274 684 aa18.49■□□□□ 0.55
VMP1-206ENST00000587945 USP50Q70EL3 339 aaPredicted RBP18.49■□□□□ 0.55
VMP1-206ENST00000587945 CCDC191Q8NCU4 936 aa18.49■□□□□ 0.55
VMP1-206ENST00000587945 METTL22Q9BUU2 404 aaPredicted RBP18.49■□□□□ 0.55
VMP1-206ENST00000587945 SEC31BQ9NQW1 1179 aa18.49■□□□□ 0.55
VMP1-206ENST00000587945 MAP3K2Q9Y2U5 619 aa18.49■□□□□ 0.55
VMP1-206ENST00000587945 RIMBP2O15034 1052 aa18.48■□□□□ 0.55
VMP1-206ENST00000587945 ANP32CO43423 234 aa18.48■□□□□ 0.55
VMP1-206ENST00000587945 DDX58O95786 925 aaKnown RBP18.48■□□□□ 0.55
VMP1-206ENST00000587945 RPS8P62241 208 aaKnown RBP18.48■□□□□ 0.55
VMP1-206ENST00000587945 GPR101Q96P66 508 aaPredicted RBP18.48■□□□□ 0.55
VMP1-206ENST00000587945 CCDC85AQ96PX6 553 aaPredicted RBP18.48■□□□□ 0.55
VMP1-206ENST00000587945 CWC25Q9NXE8 425 aaPredicted RBP18.48■□□□□ 0.55
VMP1-206ENST00000587945 POLLQ9UGP5 575 aa18.48■□□□□ 0.55
VMP1-206ENST00000587945 SALL2Q9Y467 1007 aaPredicted RBP18.48■□□□□ 0.55
VMP1-206ENST00000587945 LAMB2P55268 1798 aa18.47■□□□□ 0.55
VMP1-206ENST00000587945 ADAMTSL1Q8N6G6 1762 aa18.47■□□□□ 0.55
VMP1-206ENST00000587945 COL4A1P02462 1669 aa18.47■□□□□ 0.55
VMP1-206ENST00000587945 C6orf229H3BNL8 230 aa18.47■□□□□ 0.55
VMP1-206ENST00000587945 PCCAP05165 728 aaPredicted RBP18.47■□□□□ 0.55
VMP1-206ENST00000587945 VEGFBP49765 207 aa18.47■□□□□ 0.55
VMP1-206ENST00000587945 WASHC4Q2M389 1173 aa18.47■□□□□ 0.55
VMP1-206ENST00000587945 BCL2L13Q9BXK5 485 aa18.47■□□□□ 0.55
VMP1-206ENST00000587945 ADARB2Q9NS39 739 aaKnown RBP18.47■□□□□ 0.55
VMP1-206ENST00000587945 SHTN1A0MZ66 631 aa18.46■□□□□ 0.55
VMP1-206ENST00000587945 PI4KAP2A4QPH2 592 aa18.46■□□□□ 0.55
VMP1-206ENST00000587945 TRAF5O00463 557 aa18.46■□□□□ 0.55
VMP1-206ENST00000587945 TNIP1Q15025 636 aa18.46■□□□□ 0.55
VMP1-206ENST00000587945 TWISTNBQ3B726 338 aaPredicted RBP18.46■□□□□ 0.55
VMP1-206ENST00000587945 G2E3Q7L622 706 aa18.46■□□□□ 0.55
VMP1-206ENST00000587945 PI4KAP1Q8N8J0 262 aa18.46■□□□□ 0.55
VMP1-206ENST00000587945 CHMP4AQ9BY43 222 aa18.46■□□□□ 0.55
VMP1-206ENST00000587945 DBNDD1Q9H9R9 158 aa18.46■□□□□ 0.55
VMP1-206ENST00000587945 DUOX1Q9NRD9 1551 aa18.46■□□□□ 0.55
VMP1-206ENST00000587945 IGKV5-2P06315 115 aa18.45■□□□□ 0.54
VMP1-206ENST00000587945 DOK7Q18PE1 504 aa18.45■□□□□ 0.54
VMP1-206ENST00000587945 KSR2Q6VAB6 950 aa18.45■□□□□ 0.54
VMP1-206ENST00000587945 STK31Q9BXU1 1019 aa18.45■□□□□ 0.54
VMP1-206ENST00000587945 ZBTB12Q9Y330 459 aaPredicted RBP18.45■□□□□ 0.54
VMP1-206ENST00000587945 DDX60Q8IY21 1712 aaKnown RBP18.45■□□□□ 0.54
VMP1-206ENST00000587945 PDE8AO60658 829 aa18.44■□□□□ 0.54
VMP1-206ENST00000587945 HSP90B1P14625 803 aaKnown RBP18.44■□□□□ 0.54
VMP1-206ENST00000587945 CCDC152Q4G0S7 254 aa18.44■□□□□ 0.54
VMP1-206ENST00000587945 TBC1D16Q8TBP0 767 aa18.44■□□□□ 0.54
VMP1-206ENST00000587945 TRPM4Q8TD43 1214 aa18.44■□□□□ 0.54
VMP1-206ENST00000587945 KCNQ5Q9NR82 932 aa18.44■□□□□ 0.54
VMP1-206ENST00000587945 ABT1Q9ULW3 272 aaKnown RBP18.44■□□□□ 0.54
VMP1-206ENST00000587945 IL16Q14005 1332 aa18.44■□□□□ 0.54
VMP1-206ENST00000587945 TAF1P21675 1872 aa18.43■□□□□ 0.54
VMP1-206ENST00000587945 PSMD14O00487 310 aa18.43■□□□□ 0.54
VMP1-206ENST00000587945 SLC4A2P04920 1241 aa18.43■□□□□ 0.54
VMP1-206ENST00000587945 HIRAP54198 1017 aaPredicted RBP18.43■□□□□ 0.54
VMP1-206ENST00000587945 DEFB115Q30KQ5 88 aa18.43■□□□□ 0.54
VMP1-206ENST00000587945 CNOT7Q9UIV1 285 aaKnown RBP18.43■□□□□ 0.54
VMP1-206ENST00000587945 RASSF10A6NK89 507 aa18.42■□□□□ 0.54
VMP1-206ENST00000587945 ECE2O60344 883 aa18.42■□□□□ 0.54
VMP1-206ENST00000587945 CWF19L2Q2TBE0 894 aaKnown RBP18.42■□□□□ 0.54
VMP1-206ENST00000587945 UFL1O94874 794 aa18.41■□□□□ 0.54
VMP1-206ENST00000587945 CST9Q5W186 159 aa18.41■□□□□ 0.54
VMP1-206ENST00000587945 MICALL2Q8IY33 904 aa18.41■□□□□ 0.54
VMP1-206ENST00000587945 EYA3Q99504 573 aa18.41■□□□□ 0.54
VMP1-206ENST00000587945 ANKIB1Q9P2G1 1089 aa18.41■□□□□ 0.54
VMP1-206ENST00000587945 FANCIQ9NVI1 1328 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms